View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9707_low_2 (Length: 617)
Name: NF9707_low_2
Description: NF9707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9707_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 581; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 4 - 600
Target Start/End: Original strand, 9232430 - 9233026
Alignment:
| Q |
4 |
gagtttcgtgttgaggatattaaggttgggtgtgattttatggtggctacattgggtaaggcacaatcagagactgtgaaagagaatcttacttatgatg |
103 |
Q |
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| T |
9232430 |
gagtatcgtgttgaggatattaaggttgggtgtgattttatggtggctacattgggtaaggcacaatcagagactgtgaaagagaatgttacttatgatg |
9232529 |
T |
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| Q |
104 |
agattcatgggatgatagttgatggagttgaggtttcatggttgcctgtaatctgtgaagatagatgtggaaagggaacaagttgtaaggttgttgatga |
203 |
Q |
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| T |
9232530 |
agattcatgggatgatagttgatggagttgaggtttcatggttgcctgtaatctgtgaagatagatgtggaaagggaacaagttgtaaggttgttgatga |
9232629 |
T |
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| Q |
204 |
agaaaaaggagaagttcaatgtaataagcaattatgtcattatgcttaccaaacaactgataagtgcggtatgtatgaaattttgacatgatttagtgtt |
303 |
Q |
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| T |
9232630 |
agaaaaaggagaagttcaatgtaataagcagttatgtcattatgcttaccaaacaactgataagtgcggtatgtatgaaattttgacatgatttagtgtt |
9232729 |
T |
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| Q |
304 |
ttctaaaactggttttattttcaaaatagattctaatgatactgttttcaattctttccttcttaaactttatttctgaaataaaactgattttgtcata |
403 |
Q |
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| T |
9232730 |
ttctaaaactggttttattttcaaaatagattctaatgatactgttttcaattctttccttcttaaactttatttctgaaataaaactgattttgtcata |
9232829 |
T |
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| Q |
404 |
gataactaactaatcttgtgcatcattcaagaagattatgactgaaattccctcaaacagacataattaacttgtacaaacaaatgtttaaatgttggtc |
503 |
Q |
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| T |
9232830 |
gataactaactaatcttgtgcatcattcaagaagattatgactgaaattccctcaaacagacataattaacttgtacaaacaaatgtttaaatgttggtc |
9232929 |
T |
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| Q |
504 |
cacgtaagtcttttgaattataagctaactatattattgttttatggtgtttcagaacttcaagaccagatatttggttatactcgtggtatggatt |
600 |
Q |
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| T |
9232930 |
catgtaagtcttttgaattataagctaactatattattgttttatggtgtttcagaacttcaagaccagatatttggttatactcgtggtatggatt |
9233026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 9386192 - 9385947
Alignment:
| Q |
18 |
ggatattaaggttgggtgtgattttatggtggctacattgggtaaggcacaatcagagactg---tgaaagagaatcttacttatgatgagattcatggg |
114 |
Q |
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| T |
9386192 |
ggatattaaggttgggtgtgattttatggtggctacgttgggtaggccattgttgaagattgaagtgaaagagaagatttcttatgatgtgattcatggg |
9386093 |
T |
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| Q |
115 |
atgatagttgatggagttgaggtttcatggttgcctgtaatctgtgaagatagatgtggaaagggaacaagttgtaaggttgttgatgaagaaaaaggag |
214 |
Q |
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| T |
9386092 |
atgataattgatggatttgagctttcatggttgcctgtgatttgtgaagatagatgtggaaaggagacaagttgtgaggttgttgatgaagatagtggag |
9385993 |
T |
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| Q |
215 |
aagttcaatgtaataagcaattatgtcattatgcttaccaaacaac |
260 |
Q |
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| T |
9385992 |
aagttcaatgtgataagcgattctgtcattatgtataccaaacaac |
9385947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 538 - 600
Target Start/End: Complemental strand, 9385487 - 9385425
Alignment:
| Q |
538 |
tattgttttatggtgtttcagaacttcaagaccagatatttggttatactcgtggtatggatt |
600 |
Q |
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| T |
9385487 |
tattattttgtggtgtttcaggacttcaggaccagatatttggttatgctcgtggtaaggatt |
9385425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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