View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9707_low_4 (Length: 410)
Name: NF9707_low_4
Description: NF9707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9707_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 23 - 392
Target Start/End: Complemental strand, 45659919 - 45659552
Alignment:
| Q |
23 |
aaatagtttgattacttgttggctatcatcaatattatgattatgcatcgtgatacttgtactaactcaagaactatggattgacatttttgtcagctgt |
122 |
Q |
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| T |
45659919 |
aaatagtttgattacttgttggctattatcaatattatgattatgcatcgtgatacttgtactaactcaagaactatggattgacatttttgtaagctgt |
45659820 |
T |
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| Q |
123 |
taaattgacaatttgtagtgctgtgttaacgaagttctattactgatatgtagtagtaatactaataagtaatgttctttgtcacagtttcagtatgttt |
222 |
Q |
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| T |
45659819 |
taaattgacaatttgtagtgctgtgttaacgaagttctattactgatatgtagtagtaatactaataagtaatgttctttgtcacagtttcagtatgttt |
45659720 |
T |
|
| Q |
223 |
ttcgcttttccctttacttattgatatggtaacagcttttgtaaattaccgttccttttggttgtcaatgttgaccccagatatttacttttcccatgaa |
322 |
Q |
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| T |
45659719 |
ttcgc-tttccctttacttattgatatggtaacagcttttgtaaattacc-ttccttttggttgtcaatgttgaccccagatatttgcttttcccatgaa |
45659622 |
T |
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| Q |
323 |
ggttggttcttctacatgcacagttggggaaaagaatttacttgactctcttttggcaacacttactaac |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45659621 |
ggttggttcttctacatgcacagttggggaaaagaatttacttgactctcttttggcaacacttactaac |
45659552 |
T |
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