View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9707_low_5 (Length: 385)
Name: NF9707_low_5
Description: NF9707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9707_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 370
Target Start/End: Complemental strand, 6949583 - 6949235
Alignment:
| Q |
16 |
aaaatcacactagatcattgtaagatacaaagttaatgataattctgaactattaaagaacacagccaattaatacatctannnnnnnnnnnnnnn-aat |
114 |
Q |
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| T |
6949583 |
aaaatcacactagatcattgtaagatacaaagttaatgataa------actattaaaaaacacagccaattaatacatctatttttttactttttttaat |
6949490 |
T |
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| Q |
115 |
actccttccggtcatatttataagcaactttccatttttaggcttcctgatgattggggctgttttcatactcaagacaaattatc-aaagcctggcaac |
213 |
Q |
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| T |
6949489 |
acttcttccggtcatatttataagcaactttccatttttaggcttcctaatgattggggctgttttcatactcaagacaaattatcaaaagcctggcaac |
6949390 |
T |
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| Q |
214 |
aagatagttaccacaatagcactgaagttcagatgaaaaggtttcaaattctttcaaatttcaattggatcaacagattacactaattacttgagacgtg |
313 |
Q |
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| T |
6949389 |
aagatagttaccacaatagcactaaagttcagatg-aaaggtttcaaattctttcaaatttcaattggatcaacagattacactaattacttgaga-gtg |
6949292 |
T |
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| Q |
314 |
agttggttaagaaatttctcttatcaggtgtactgattttgacttggtacttcactc |
370 |
Q |
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| T |
6949291 |
acttggttaagaaatttctcttatcaggtgtactgattttgacttggtacttcactc |
6949235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 10184035 - 10184068
Alignment:
| Q |
112 |
aatactccttccggtcatatttataagcaacttt |
145 |
Q |
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| T |
10184035 |
aatactccctccggtcatatttataagcaacttt |
10184068 |
T |
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