View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_high_6 (Length: 238)
Name: NF9708_high_6
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 26496852 - 26496640
Alignment:
| Q |
1 |
tgttgctttccaaaacccagctgtagttgctctatttgttcttgttcctgttgggtatttcttgtccttgtgactgaagaaataccactcattttgtggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26496852 |
tgttgctttccaaaacccagctgtagttgctctatttgttcttgttcctgttgggtatttcttgtccttgtgactgaagaaataccactcattttgtggc |
26496753 |
T |
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| Q |
101 |
cctgatccaatcctacacttatctgcaacaagtacgcacacacaaaactattcaatttaacacaaaattaagaggttaacaatgatgtttaattaattca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| | | ||||||||||||||| |||| |
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| T |
26496752 |
cctgatccaatcctacacttatctgcaacaagtacgcacacacaaaactattaaatagaacacaaaattatgagatgagtaatgatgtttaattagttca |
26496653 |
T |
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| Q |
201 |
tcttagaaaactc |
213 |
Q |
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||||||||||||| |
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| T |
26496652 |
tcttagaaaactc |
26496640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 12276633 - 12276535
Alignment:
| Q |
1 |
tgttgctttccaaaacccagctgtagttgctctatttgttcttgttcctgttgggtatttcttgtccttgtgactgaagaaataccactcattttgtgg |
99 |
Q |
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| T |
12276633 |
tgttgctttccaaaaccctgcatttgttgctctattagtccttgaccctgttgggtactttctgtccttgtgactgaagaaataccactcgttttgtgg |
12276535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 12851305 - 12851209
Alignment:
| Q |
1 |
tgttgctttccaaaacccagctgtagttgctctatttgttcttgttcctgttgggtatttcttgtccttgtgactgaagaaataccactcattttgt |
97 |
Q |
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| T |
12851305 |
tgttgctttccaaaatccagctgcagttgctctatttgttcttgtaccagttggatacttcttatctttatggctaaaaaaataccactcattttgt |
12851209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 42048629 - 42048721
Alignment:
| Q |
5 |
gctttccaaaacccagctgtagttgctctatttgttcttgttcctgttgggtatttcttgtccttgtgactgaagaaataccactcattttgt |
97 |
Q |
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| T |
42048629 |
gctttccagaatcctgcttttgttgctctattcgttcgagttcctgttggatacttcttatctttatgactaaagaaataccagtcattttgt |
42048721 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 32225642 - 32225732
Alignment:
| Q |
2 |
gttgctttccaaaacccagctgtagttgctctatttgttcttgttcctgttgggtatttcttgtccttgtgactgaagaaataccactcat |
92 |
Q |
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||||||||||| ||||| || | || |||||||| ||||| || |||||||| |||||||| || |||||||| || ||||||||||||| |
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| T |
32225642 |
gttgctttccagaaccctgccattgtagctctattcgttctcgtccctgttggatatttcttatctttgtgactaaaaaaataccactcat |
32225732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 43438746 - 43438658
Alignment:
| Q |
5 |
gctttccaaaacccagctgtagttgctctatttgttcttgttcctgttgggtatttcttgtccttgtgactgaagaaataccactcatt |
93 |
Q |
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|||||||| || ||||| | ||| |||||||| |||||||||||||| || || ||||| || ||||| ||||| || ||||||||||| |
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| T |
43438746 |
gctttccagaatccagcagcagtggctctattagttcttgttcctgtaggatacttcttatctttgtggctgaaaaagtaccactcatt |
43438658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 8450156 - 8450068
Alignment:
| Q |
5 |
gctttccaaaacccagctgtagttgctctatttgttcttgttcctgttgggtatttcttgtccttgtgactgaagaaataccactcatt |
93 |
Q |
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||||||||||||||||| | || ||||| || |||||||| |||||||| || || || || || || ||||| |||||||||||||| |
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| T |
8450156 |
gctttccaaaacccagccatggtagctctgttggttcttgtccctgttggatactttttatctttatggctgaaaaaataccactcatt |
8450068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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