View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_low_1 (Length: 509)
Name: NF9708_low_1
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 491
Target Start/End: Complemental strand, 39944950 - 39944468
Alignment:
| Q |
8 |
ttggtgttgttatgggagatgaaaaacatgaagaggaagataatggggagggagaatatgtgtgaaaagggttagatttgaaattttaatttcacaaaaa |
107 |
Q |
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| T |
39944950 |
ttggtgttgttatgggagatggaaaacatgaagaggaagataatggggagggagaatgtgtgtgaaaagggttagatttgaaattttaatttcacaaaaa |
39944851 |
T |
|
| Q |
108 |
gattattttggtaaatttggagtgtaactaaatgtgttcgtataaagaatctgatagttattcagaacatagaccatacaaactagtaaacttaatgcat |
207 |
Q |
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| T |
39944850 |
gattattttggtaaatttggagtgtaactaaatgtgttcgtataaagaatctgatagttattcggaacatagaccatacaaactagtaaacttaatgcat |
39944751 |
T |
|
| Q |
208 |
gtattatgcaagtggcaatgacaatgacatctttttcttcgtcaaagcnnnnnnnnnnnnnnntcttgtttccaccatactttgctttgtaaaattaacc |
307 |
Q |
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| T |
39944750 |
gtattatgcaagtggcaatgactatgacat-tttttcttcgtcaaagcaaaaaaataaataaatcttgtttccaccatactttgctttgtaaaattaacc |
39944652 |
T |
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| Q |
308 |
tttaattacggattcctgggtgnnnnnnncaagacaaaatgacagcctagcatagagcttggttaagaatctggaatttgttctgtgtggggtcataagt |
407 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39944651 |
tttaattacggattcctgggtgaaaaaaacaagacaaaatgacagcctagcatagagcttggttaagaatctggaatttgttctgtgtggggtcataagt |
39944552 |
T |
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| Q |
408 |
catttcaatttcatgcaataaaataccataaataacaaacatgcagtaatgcattatgcaccaagcctggtctaccccacatgg |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39944551 |
catttcaatttcatgcaataaaataccataaataacaaacatgcagtaatgcattatgcaccaagcctggtctaccccacatgg |
39944468 |
T |
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