View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_low_10 (Length: 329)
Name: NF9708_low_10
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 2024658 - 2024365
Alignment:
| Q |
21 |
atcaacaatagaagaaagataatgtgtacaaattaatagaaggcaatagaaagtgacata-----accttaaatttgtactagtaataattatgagtagt |
115 |
Q |
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| T |
2024658 |
atcaacaatagcagaaagataatgtgtacaaattaatagaaggcaatagaaagtgacatacagtaaccttaaatttgtactagtaataattatgagcagt |
2024559 |
T |
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| Q |
116 |
catatttttaaattcatcttcacattaatannnnnnnnnnnnnnnnnnngagtttagatctgcacacacttctttctcatattttctttttgtgtattta |
215 |
Q |
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| T |
2024558 |
catatttttaaattcatcttcacattaatactctctctctctctc----gagttcagatctgcacacacttctttctcatattttctttttgtgtattta |
2024463 |
T |
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| Q |
216 |
ttttgtcatagtttgtgcttccttcacacgcccacttccatttctttctttctttcttaatggatcaatgtcatttgctatctttgttgatttcatat |
313 |
Q |
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| T |
2024462 |
ttttgtcatagtttgtgcttccttcacacgcccacttccatttctttctttctttcttaatggattaatgtcatttgctatctttgttgatttcatat |
2024365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 311
Target Start/End: Original strand, 1959040 - 1959171
Alignment:
| Q |
185 |
ttctttctcatattttctttttgtgtatttattttgtcatagtttgtgct-tccttcacacgcccacttccatttc------tttctttctttcttaatg |
277 |
Q |
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| T |
1959040 |
ttctttctcacattttcttt--gtgtatttattttgtcatggcttgtgttatccttcacacggccactgccactgccacttttctctttctttctaaatg |
1959137 |
T |
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| Q |
278 |
gatcaatgtcatttgctatctttgttgatttcat |
311 |
Q |
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| T |
1959138 |
gattaatgtcatttgttatctttgttgatttcat |
1959171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 1958898 - 1958978
Alignment:
| Q |
21 |
atcaacaatagaagaaagataatgtgtacaaattaatagaaggcaatagaaagtg-----acataaccttaaatttgtactagta |
100 |
Q |
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||||||||||| |||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1958898 |
atcaacaatagcagaaagataatgtgtaca----cataaaaggcaatagaaagtgacataacataaccttaaatttgtactagta |
1958978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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