View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_low_12 (Length: 310)
Name: NF9708_low_12
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 42893517 - 42893226
Alignment:
| Q |
1 |
aatataacataaacatagcttggtgcttaacnnnnnnnnnnnnnngcttggtctaaattaatcaaaagaatattagccaatccttatcaacattcaaaaa |
100 |
Q |
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| T |
42893517 |
aatataacataaacatagcttggtgcttaacaaaaactaaaaaaagcttggtctaaattaatcaaaagaatattagccaatccttatcaacattcaaaaa |
42893418 |
T |
|
| Q |
101 |
gtcatccacacttaccttatgactattagaaaatagaaatcaatagcaacatgtaaattataagttggtagaaattattacagaaaagcactcaacataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42893417 |
gtcatccacacttaccttatgactattagaaaatagaaatcaatagcaacatgtaaattataagttggtagaaattattacagaaaagcactcaacacaa |
42893318 |
T |
|
| Q |
201 |
actggctagtttctttttgtataggcatgaaattatttgctattcaccatcaaacatcgaaaacattctctaatcaatgacaaccaagacat |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42893317 |
actggctagtttctttttgtataggcatgaaattatttgctattcaccatcaaacatcgaaaacattctctaatcaatgacaaccaagacat |
42893226 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 8705688 - 8705751
Alignment:
| Q |
227 |
atgaaattatttgctattcaccatcaaacatcgaaaacattctctaatcaatgacaaccaagac |
290 |
Q |
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||||||| || || ||||||||||||||||| ||| ||||| ||||| |||||||||||||||| |
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| T |
8705688 |
atgaaatcatatgttattcaccatcaaacattgaacacattttctaaacaatgacaaccaagac |
8705751 |
T |
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