View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_low_14 (Length: 284)
Name: NF9708_low_14
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 43001111 - 43001380
Alignment:
| Q |
1 |
gagaaagagttattcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcagactgcgttgagt |
100 |
Q |
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| T |
43001111 |
gagaaagaactattcttggagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcagactgcattgagt |
43001210 |
T |
|
| Q |
101 |
tctactacaagaatcacaaatctgaatgttttgagaaactgaagaggaaagatgttggtaagctagggaagtcatatgcagctaaaactaactcgatgac |
200 |
Q |
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| T |
43001211 |
tctactacaagaatcacaaatccgaatgttttgagaaactgaagaggaaagatattggtaagctagggaagtcatatgcagctaaaactaacttgatggc |
43001310 |
T |
|
| Q |
201 |
atcaggtaaaaaatggaaccatgaagttaatgtttcttcacttgatattttgagtgctgcttcagtgatg |
270 |
Q |
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| T |
43001311 |
atcaggtaaaaaatggaatcatgaagttaatgtttcttcacttgatattttgagtgctgcttcagtgatg |
43001380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 10696111 - 10696264
Alignment:
| Q |
1 |
gagaaagagttattcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcagactgcgttgagt |
100 |
Q |
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||||||||| | |||||| ||||||||||||| |||||||||||||| | |||||| || |||||||||| ||||||||||| || ||||| || || | |
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| T |
10696111 |
gagaaagaggttttcttggagaaatttgctgcctttggaaaagattttcaaaaaatttctactttccttgaccacaagacaacagcggactgtgtggaat |
10696210 |
T |
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| Q |
101 |
tctactacaagaatcacaaatctgaatgttttgagaaactgaagaggaaagatg |
154 |
Q |
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| T |
10696211 |
tctactacaaaaatcacaagtctgattgttttgagaaaatcaagaagaaagatg |
10696264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 10695493 - 10695368
Alignment:
| Q |
13 |
ttcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcagactgcgttgagttctactacaaga |
112 |
Q |
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|||||| |||||||||| || |||||||||||||| || |||||| || |||||||||| ||||||||||| |||||||| ||||| ||||| ||||| | |
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| T |
10695493 |
ttcttggagaaatttgcggcctttggaaaagattttcgaaaaatttctactttccttgaccacaagacaacagcagactgtgttgaattctaatacaaaa |
10695394 |
T |
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| Q |
113 |
atcacaaatctgaatgttttgagaaa |
138 |
Q |
| |
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|||| || ||||| |||||||||||| |
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| T |
10695393 |
atcataagtctgattgttttgagaaa |
10695368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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