View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_low_16 (Length: 270)
Name: NF9708_low_16
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 11401501 - 11401249
Alignment:
| Q |
1 |
aaataaatatcgactattcgcattgtgaaattaggatttatgtgtttatttgaatttctatttgtgtttcttcaaggtatgggggtatgttgtgtgagtg |
100 |
Q |
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| T |
11401501 |
aaataaatatcgactattcgcattgtgaaattaggatttatgtgtctatttgaatttctatttgtgtttcttcaaggtatgggggtatgttgtgtgagtg |
11401402 |
T |
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| Q |
101 |
tggatcttaaggattgatgtttgagttctacttgttagattttatgttatgacatagataatttgatcatgtttttacttttactctccaaagtaacatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11401401 |
tggatcttaaggattgatgtttgagttctacttgttacattttatgttgtg-catagataatttgatcatgtttttacttttactctccaaagtatcatt |
11401303 |
T |
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| Q |
201 |
gtgtgcagattaatccttatattaacttttttatataaagtggtgcattgtgtg |
254 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11401302 |
gtttgcagattaatccttatattaacttttttatataaagtggtgcattgtgtg |
11401249 |
T |
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