View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9708_low_18 (Length: 256)

Name: NF9708_low_18
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9708_low_18
NF9708_low_18
[»] chr4 (9 HSPs)
chr4 (20-256)||(10120142-10120379)
chr4 (22-253)||(24490331-24490563)
chr4 (20-165)||(10120461-10120607)
chr4 (22-186)||(30564044-30564209)
chr4 (22-133)||(10318460-10318571)
chr4 (64-120)||(653382-653438)
chr4 (13-97)||(19725126-19725210)
chr4 (39-93)||(3258651-3258705)
chr4 (65-102)||(15498977-15499014)
[»] chr3 (13 HSPs)
chr3 (20-256)||(20810669-20810903)
chr3 (20-256)||(26962355-26962591)
chr3 (20-200)||(13022322-13022503)
chr3 (22-170)||(53119827-53119976)
chr3 (20-133)||(38436643-38436756)
chr3 (20-199)||(33088972-33089141)
chr3 (22-100)||(21494027-21494105)
chr3 (23-171)||(6025463-6025609)
chr3 (31-101)||(1740826-1740896)
chr3 (31-99)||(25023640-25023708)
chr3 (22-101)||(26928907-26928980)
chr3 (35-97)||(47408698-47408761)
chr3 (26-99)||(795122-795195)
[»] chr1 (7 HSPs)
chr1 (22-256)||(26650727-26650962)
chr1 (20-169)||(13891108-13891258)
chr1 (78-170)||(19406519-19406611)
chr1 (26-100)||(39747002-39747076)
chr1 (22-88)||(19422599-19422665)
chr1 (159-204)||(39746947-39746992)
chr1 (64-120)||(10106441-10106496)
[»] chr7 (8 HSPs)
chr7 (20-256)||(33226644-33226871)
chr7 (22-178)||(9973761-9973917)
chr7 (64-256)||(24528696-24528879)
chr7 (22-101)||(47761925-47762004)
chr7 (146-207)||(28292173-28292234)
chr7 (20-74)||(28292247-28292301)
chr7 (39-97)||(7874816-7874874)
chr7 (56-97)||(24169772-24169813)
[»] scaffold0011 (2 HSPs)
scaffold0011 (20-170)||(7344-7494)
scaffold0011 (20-256)||(1863-2088)
[»] chr6 (12 HSPs)
chr6 (15-190)||(17281189-17281368)
chr6 (49-228)||(17289952-17290132)
chr6 (15-186)||(11956334-11956506)
chr6 (145-228)||(10485472-10485555)
chr6 (15-100)||(29325831-29325915)
chr6 (15-100)||(29326006-29326090)
chr6 (22-149)||(3902573-3902699)
chr6 (22-198)||(3902215-3902391)
chr6 (20-89)||(19478445-19478514)
chr6 (152-256)||(19478512-19478606)
chr6 (34-88)||(10485382-10485436)
chr6 (35-99)||(5600690-5600754)
[»] chr8 (7 HSPs)
chr8 (20-199)||(31030826-31031006)
chr8 (20-206)||(19430309-19430494)
chr8 (22-206)||(19566460-19566643)
chr8 (22-149)||(33616395-33616522)
chr8 (155-206)||(19435858-19435909)
chr8 (155-206)||(19572007-19572058)
chr8 (31-101)||(33848315-33848386)
[»] chr2 (2 HSPs)
chr2 (94-177)||(42914999-42915082)
chr2 (40-99)||(5089595-5089654)
[»] scaffold0067 (1 HSPs)
scaffold0067 (22-153)||(33629-33761)
[»] chr5 (3 HSPs)
chr5 (26-98)||(31987029-31987101)
chr5 (64-120)||(7805409-7805464)
chr5 (31-115)||(13582395-13582479)
[»] scaffold0027 (1 HSPs)
scaffold0027 (33-98)||(43413-43478)
[»] scaffold0034 (1 HSPs)
scaffold0034 (15-55)||(121170-121210)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 10120379 - 10120142
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaa 119  Q
    ||||||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  10120379 aggaatcatcgactgtgaaattcggtgtgtagaatgaggggggcgagctctccttttataggaagagttcgtaacaaaaaacgagagacttggggattaa 10120280  T
Q  120 gtcgacttaatcctcaagtaaacgcgttttgtttcttaattggatatatccagaaacttctggatacgcg-ttttggatcgggtcggatcgtaacaattt 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| || |||||||||||||||||||||||||||||    
T  10120279 gtcggcttaatcctcaagtaaacgcgttttgtttcttaattggatatatccgagaacttctggatactcgtttttggatcgggtcggatcgtaacaattt 10120180  T
Q  219 tatttgttacttgtagcactttcggataatgattagat 256  Q
    ||||||||||   |||| ||||||||||||||||||||    
T  10120179 tatttgttacgcatagcgctttcggataatgattagat 10120142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 22 - 253
Target Start/End: Original strand, 24490331 - 24490563
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagt 121  Q
    |||||||| |||||||||||||||||||||||||||||| |  ||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||    
T  24490331 gaatcatcaactgtgaatttcggtgtgaagaatgagtggagcaagctctccttttatagggagagttcgtaacaaaaaacgagtgacttggggattaagt 24490430  T
Q  122 cgacttaatcctcaagtaaacgcgtttt-gtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaatttta 220  Q
       |||||||||||||||||||||||||  |||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  24490431 aagcttaatcctcaagtaaacgcgttttcatttcttaattggatatatctggaaacttctggatacacgttttggatcgggtcggatcgtaacgatttta 24490530  T
Q  221 tttgttacttgtagcactttcggataatgatta 253  Q
    |||||||| |||||| ||||| |||||||||||    
T  24490531 tttgttacgtgtagcgctttccgataatgatta 24490563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 10120607 - 10120461
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaa-aaaacttgagacttggggatta 118  Q
    ||||||||||||||| ||| ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  10120607 aggaatcatcgactgcgaaattcggtgtgtagaatgaggggggcgagctctccttttataggaagagttcgtaacaaaaaaacgagagacttggggatta 10120508  T
Q  119 agtcgacttaatcctcaagtaaacgcgttttgtttcttaattggata 165  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  10120507 agtcggcttaatcctcaagtaaacgcgttttgtttcttaattggata 10120461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 30564209 - 30564044
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagt 121  Q
    |||||||| ||||||||||||||||| |||||||||||||  |||||||||||||||||| |||||||||||||||||||  | |||||  |||||||||    
T  30564209 gaatcatcaactgtgaatttcggtgtaaagaatgagtgggacgagctctccttttatagggagagttcgtaacaaaaaacgagtgacttaaggattaagt 30564110  T
Q  122 cgacttaatcctcaagtaaacgcgttt-tgtttcttaattggatatatccagaaacttctggatac 186  Q
    |  ||||||| | ||| || ||||||| ||||||||| |||||||||||  |||| |||| |||||    
T  30564109 ctgcttaatctttaagcaaccgcgtttatgtttcttagttggatatatctggaaaattctagatac 30564044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 10318571 - 10318460
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagt 121  Q
    |||||||  ||||||||||||||||| |||||||||| ||| |||||||||||||||||| |||||| ||||||||||||  | |||||  |||||||||    
T  10318571 gaatcatgaactgtgaatttcggtgtaaagaatgagttgggggagctctccttttataggcagagtttgtaacaaaaaacgagtgacttaaggattaagt 10318472  T
Q  122 cgacttaatcct 133  Q
    |  |||||||||    
T  10318471 cagcttaatcct 10318460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 653382 - 653438
Alignment:
Q  64 gagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaag 120  Q
    ||||||||||||||||||| ||||||||||| ||||||  |||||||||||||||||    
T  653382 gagctctccttttataggaggagttcgtaactaaaaacgagagacttggggattaag 653438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 19725126 - 19725210
Alignment:
Q  13 agagcataggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaa 97  Q
    |||||||||||| |||| |||||   |||||||||| | ||| |||| || ||||| ||| |||||||| |||||||||||||||    
T  19725126 agagcataggaaacatcaactgtatttttcggtgtgtaaaataagtgaggcgagctttccatttatagggagagttcgtaacaaa 19725210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 3258651 - 3258705
Alignment:
Q  39 tttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaa 93  Q
    |||| |||||||||||||||| || |||||||||||||||| | |||||| ||||    
T  3258651 tttcagtgtgaagaatgagtgaggcgagctctccttttataaggagagtttgtaa 3258705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 15498977 - 15499014
Alignment:
Q  65 agctctccttttataggaagagttcgtaacaaaaaact 102  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  15498977 agctctccttttatagggagagttcgtaataaaaaact 15499014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 20810669 - 20810903
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaa 119  Q
    |||||||||| |||| ||| || ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  20810669 aggaatcatcaactgcgaaatttggtgtgaagaatgaggggggcgagctctccttttataggaagagttcgtaacaaaaaacgagagacttggggattaa 20810768  T
Q  120 gtcgacttaatcctcaagtaaacgcgttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaatttt 219  Q
    |  | |||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  20810769 g--ggcttaatcctcaagtaaacacgttttgtttcgtaattggatatatccggaaacttctggatacttgttttggatcgggtcggatcgtaacaatttt 20810866  T
Q  220 atttgttacttgtagcactttcggataatgattagat 256  Q
    |||||||||  ||||| ||||||||||||||||||||    
T  20810867 atttgttacgcgtagcgctttcggataatgattagat 20810903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 26962355 - 26962591
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaa 119  Q
    |||||||||||| |||||||||  |||| ||||  |||||||| ||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||||    
T  26962355 aggaatcatcgattgtgaattttagtgtaaagatggagtggggcgagctctccttttataggaagagtttgtaacaaaaaacgagagtcttggggattaa 26962454  T
Q  120 gtcgacttaatcctcaagtaaacgcgttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaatttt 219  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||    
T  26962455 gtctgcttaatcctcaagtaaacgcgttttgtttcttaattggatatatccggaaagttttggatacgcgttttggatcgggtcggatcgtaacaatttt 26962554  T
Q  220 atttgttacttgtagcactttcggataatgattagat 256  Q
    |||||||||  | | |  |||||||||||||||||||    
T  26962555 atttgttacgcgcatcgttttcggataatgattagat 26962591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 13022322 - 13022503
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaa 119  Q
    |||||||||| |||| ||| |||| ||| ||||||||| || | ||||||||||||||||||| ||||||||||||||||||  |  |||| ||||||||    
T  13022322 aggaatcatcaactgcgaaattcgatgtaaagaatgaggggagcgagctctccttttataggaggagttcgtaacaaaaaacgagttacttagggattaa 13022421  T
Q  120 gtcgacttaatcctcaagtaaacgcg-ttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgg 200  Q
    |||  ||||||||| |||  |||||| ||||||||||||||||||||||||  ||||||||||||||| |||||||||||||    
T  13022422 gtctgcttaatccttaagcgaacgcgtttttgtttcttaattggatatatctggaaacttctggatactcgttttggatcgg 13022503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 53119827 - 53119976
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggt-gagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaag 120  Q
    ||||||||||||||| | |||||||| ||||||||| ||||  |||||||||||||| |||| |||||||||||||||| |  |||||||||||||||||    
T  53119827 gaatcatcgactgtggaattcggtgtaaagaatgagggggggcgagctctccttttaaaggaggagttcgtaacaaaaa-cgagagacttggggattaag 53119925  T
Q  121 tcgacttaatcctcaagtaaacgcg-ttttgtttcttaattggatatatcc 170  Q
    ||  ||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  53119926 tctgcttaatccttaagtaaacgcgtttttgttttttaattggatatatcc 53119976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 38436756 - 38436643
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaa 119  Q
    ||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||  || |||| ||||||||    
T  38436756 aggaatcatcgactgtgaaattcggtgtgaagaatgaggggggcgagctctccttttataggaggagttcgtaacaaaaaacgagatacttagggattaa 38436657  T
Q  120 gtcgacttaatcct 133  Q
    |||  |||||||||    
T  38436656 gtctgcttaatcct 38436643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 33089141 - 33088972
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaa 119  Q
    |||||||||| |||| | | |||| || |||||||||| |||| ||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  33089141 aggaatcatcaactgcgtaattcgatgcgaagaatgaggggggcgagctctccttttataggaggagttcgtaacaaaaaacgagagacttggggattaa 33089042  T
Q  120 gtcgacttaatcctcaagtaaacgcg-ttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcg 199  Q
    |||  ||           |||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||    
T  33089041 gtctgct-----------taaacgcgtttttgtttcttaattggatatatccggaaacttctggatactcattttggatcg 33088972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 21494105 - 21494027
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaa 100  Q
    |||||||| ||||||||||||||||  |||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  21494105 gaatcatcaactgtgaatttcggtggtaagaatgagtggggcgagatctccttttataggaagaattcgtaacaaaaaa 21494027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 6025463 - 6025609
Alignment:
Q  23 aatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtc 122  Q
    ||||||| |||||||| |||||||| |||||||||||||  |||| ||||||||||||| |||||| ||||||||||||  | |||||  ||||||||||    
T  6025463 aatcatcaactgtgaaattcggtgtaaagaatgagtgggacgagccctccttttatagggagagtttgtaacaaaaaacgagtgacttaaggattaagtc 6025562  T
Q  123 gacttaatcctcaagtaaacgcgttt-tgtttcttaattggatatatcca 171  Q
      ||||||| | |||    ||||||| ||||||||| |||||||||||||    
T  6025563 agcttaatcattaag---ccgcgtttctgtttcttagttggatatatcca 6025609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 1740896 - 1740826
Alignment:
Q  31 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaac 101  Q
    ||||||||||||||||| |||||| |||| |  || ||||| ||||||| |||||||||||||||||||||    
T  1740896 actgtgaatttcggtgtaaagaataagtgagacgaactctcattttatatgaagagttcgtaacaaaaaac 1740826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 25023708 - 25023640
Alignment:
Q  31 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaa 99  Q
    ||||||||||||| |||   |||||||||||| |||||||||||||||||| |||| || |||||||||    
T  25023708 actgtgaatttcgatgtactgaatgagtggggcgagctctccttttatagggagagctcataacaaaaa 25023640  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 26928907 - 26928980
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaac 101  Q
    |||||||| ||||||||||||||||| |||||      ||| ||||||| |||||||||| |||||||||||||||||||    
T  26928907 gaatcatcaactgtgaatttcggtgtaaagaa------gggcgagctcttcttttataggcagagttcgtaacaaaaaac 26928980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 47408698 - 47408761
Alignment:
Q  35 tgaatttcggtgtgaagaatgagtggggtgagctctcc-ttttataggaagagttcgtaacaaa 97  Q
    ||||||||| ||| ||||||||| ||||||| |||||| ||||||||| |||||||||||||||    
T  47408698 tgaatttcgatgtaaagaatgagcggggtgaactctcccttttatagggagagttcgtaacaaa 47408761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 795195 - 795122
Alignment:
Q  26 catcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaa 99  Q
    |||| |||||||||||| |||| ||||||  ||| || ||| |||||||||||||| |||| ||||||||||||    
T  795195 catcaactgtgaatttcagtgtaaagaataggtgaggggagttctccttttatagggagagatcgtaacaaaaa 795122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 22 - 256
Target Start/End: Complemental strand, 26650962 - 26650727
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagt 121  Q
    ||||||||||||||| | |||||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||  || |||| | ||||||||    
T  26650962 gaatcatcgactgtggaattcggtgtgaagaatgaggggggcgagctctccttttgtaggaggagttcgtaacaaaaaacgagatacttagagattaagt 26650863  T
Q  122 cgacttaatcctcaagtaaacgcgtttt-gtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaatttta 220  Q
    |  ||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | |    
T  26650862 ctgcttaatccttaagcaaacgcgtttttgtttcttaattggatatatccggaaacttctggatactcgttttggatcgggtcggatcgtaacaatctca 26650763  T
Q  221 tttgttacttgtagcactttcggataatgattagat 256  Q
    |||||||   ||||| ||||||||||||||||||||    
T  26650762 tttgttatgcgtagcgctttcggataatgattagat 26650727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 13891108 - 13891258
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaa 119  Q
    |||||||||| |||| | | |||  ||||||||||||| || | ||||||||||||||||||| ||||||||||||||||||  |  |||| ||||||||    
T  13891108 aggaatcatcaactgcgtaattcaatgtgaagaatgaggggagcgagctctccttttataggaggagttcgtaacaaaaaacgagttacttagggattaa 13891207  T
Q  120 gtcgacttaatcctcaagtaaacgcg-ttttgtttcttaattggatatatc 169  Q
    |||  ||||||||| ||| ||||||| ||||||||||||||| ||||||||    
T  13891208 gtctgcttaatccttaagcaaacgcgtttttgtttcttaattagatatatc 13891258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 19406611 - 19406519
Alignment:
Q  78 taggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaatcctcaagtaaacgcgttttgtttcttaattggatatatcc 170  Q
    ||||||||||| ||||||||||||  |||||||||||||||||||| || ||||||||||||||   | ||||||||||||||||||||||||    
T  19406611 taggaagagtttgtaacaaaaaacgagagacttggggattaagtcggctgaatcctcaagtaaataagatttgtttcttaattggatatatcc 19406519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 39747076 - 39747002
Alignment:
Q  26 catcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaa 100  Q
    |||| |||| ||| ||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  39747076 catcaactgcgaaattcagtgtgaagaatgaggggggcgagctctccttttataggaagagttcgtaacaaaaaa 39747002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 19422665 - 19422599
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagtt 88  Q
    ||||||||||||||||| |||||||| ||||| ||| |||| |||||||| ||||||||||||||||    
T  19422665 gaatcatcgactgtgaaattcggtgtcaagaacgaggggggcgagctctcattttataggaagagtt 19422599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 39746992 - 39746947
Alignment:
Q  159 ttggatatatccagaaacttctggatacgcgttttggatcgggtcg 204  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||    
T  39746992 ttggatatatccggaaacttctggatactcgttttggatcgggtcg 39746947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 10106441 - 10106496
Alignment:
Q  64 gagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaag 120  Q
    ||||||||||||||||||| ||||||||||| ||||||  || ||||||||||||||    
T  10106441 gagctctccttttataggaggagttcgtaac-aaaaacgagatacttggggattaag 10106496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 33226644 - 33226871
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaa 119  Q
    ||||||||||||||||| | |||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  33226644 aggaatcatcgactgtggaattcggtgtaaagaatgaggggggcgagctctccttttataggaggagttcgtaacaaaaaacgagagacttggggattaa 33226743  T
Q  120 gtcgacttaatcctcaagtaaacgcg-ttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattt 218  Q
    |||  ||||||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||||||| ||||||           ||||||||||||||    
T  33226744 gtctgcttaatccttaagtaaacgcgtttttgtttcttaattggatatatctggaaacttctggatactcgtttt----------agatcgtaacaattt 33226833  T
Q  219 tatttgttacttgtagcactttcggataatgattagat 256  Q
     |||||||||  ||||| ||||||||||||||||||||    
T  33226834 catttgttacgcgtagcgctttcggataatgattagat 33226871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 9973761 - 9973917
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagt 121  Q
    |||||||| |||| ||| |||||||| ||||||||| || | ||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  9973761 gaatcatcaactgcgaaattcggtgttaagaatgaggggagcgagctctccttttataggaagagtttgtaacaaaaaacgagagacttggggattaagt 9973860  T
Q  122 cgacttaatcctcaagtaaacgcgttttgtttcttaattggatatatccagaaactt 178  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9973861 cggcttaatcctcaagtaaacgcgttttgtttcttaattggatatatccaaaaactt 9973917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 64 - 256
Target Start/End: Original strand, 24528696 - 24528879
Alignment:
Q  64 gagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaatcctcaagtaaacgcgtttt-gtttcttaattgg 162  Q
    ||||||||||||||||||| ||||||||||||||||||  |  |||| |||||||||||  ||||||||| ||| |||||| |||| |||||||||||||    
T  24528696 gagctctccttttataggaggagttcgtaacaaaaaacgagttacttagggattaagtctgcttaatccttaagcaaacgcatttttgtttcttaattgg 24528795  T
Q  163 atatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttacttgtagcactttcggataatgattagat 256  Q
    |||||||| ||||||||||||||| ||||||          ||||||||||||| | |||||||||  ||||| ||||||||||||||||||||    
T  24528796 atatatccggaaacttctggatactcgtttt----------ggatcgtaacaatctcatttgttacgcgtagcgctttcggataatgattagat 24528879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 47761925 - 47762004
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaac 101  Q
    |||||||| | ||||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||||    
T  47761925 gaatcatcaattgtgaatttcggtgtaaagaatgagtggggcgagctctcattttataggcagagttcgtaacaaaaaac 47762004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 28292234 - 28292173
Alignment:
Q  146 ttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggat 207  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  28292234 ttttgtttcttaattggatatatccggaaacttctggatactcgttttggatcgggtcggat 28292173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 28292301 - 28292247
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctcctt 74  Q
    ||||||||||||||||| | |||||||||||||||||| |||| |||||||||||    
T  28292301 aggaatcatcgactgtggaattcggtgtgaagaatgaggggggcgagctctcctt 28292247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 7874874 - 7874816
Alignment:
Q  39 tttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaa 97  Q
    |||||||||||||||| |||| || |||||||||||||| ||| | |||||||||||||    
T  7874874 tttcggtgtgaagaataagtgaggcgagctctccttttaaagggaaagttcgtaacaaa 7874816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 24169813 - 24169772
Alignment:
Q  56 agtggggtgagctctccttttataggaagagttcgtaacaaa 97  Q
    ||||||| |||||||||||||||||| ||||||||| |||||    
T  24169813 agtggggcgagctctccttttatagggagagttcgtgacaaa 24169772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 7344 - 7494
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaa 119  Q
    ||||||||||||||||| | |||||||| ||||||||| |||| ||||||||||||||||||| |||||||||||  |||||  ||||||||||||||||    
T  7344 aggaatcatcgactgtggaattcggtgtaaagaatgaggggggcgagctctccttttataggatgagttcgtaaccgaaaacgagagacttggggattaa 7443  T
Q  120 gtcgacttaatcctcaagtaaacgcgttttgtttcttaattggatatatcc 170  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  7444 gtcggcttaatcctcaagtaaacgcgttttgttccttaattggatatatcc 7494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 1863 - 2088
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaa 119  Q
    ||||||||||||||||| | |||||| | ||||||||| || | ||||||||||||||||||| |||||||||||  |||||  || |||||||||||||    
T  1863 aggaatcatcgactgtggaattcggtttaaagaatgaggggcgcgagctctccttttataggatgagttcgtaaccgaaaacgagacacttggggattaa 1962  T
Q  120 gtcgacttaatcctcaagtaaacgcgttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaatttt 219  Q
    |||  ||||||||||||||||| || ||||||| ||||||||||||||||| ||  | |           ||||||||||| || ||||||| ||||||     
T  1963 gtcagcttaatcctcaagtaaatgcattttgttccttaattggatatatccggactcgt-----------ttttggatcggatcagatcgtatcaatttc 2051  T
Q  220 atttgttacttgtagcactttcggataatgattagat 256  Q
    |||||||||  ||||| ||||||||||||||||||||    
T  2052 atttgttacgcgtagcgctttcggataatgattagat 2088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 17281368 - 17281189
Alignment:
Q  15 agcataggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaa----cttgagactt 110  Q
    |||| ||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||    |  | |||||    
T  17281368 agcacaggaagcatcaactatgaatttcggtgttaagaatgagtggggtgagctctccttttatagggagagtttgtaacaaaaaaaaaacgagtgactt 17281269  T
Q  111 ggggattaagtcgacttaatcctcaagtaaacgcgttttgtttcttaattggatatatccagaaacttctggatacgcgt 190  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||    
T  17281268 ggggattaagtcggcttaatcctgaagtaaacgcgttttgtttcttaatcggatatatccggaagcttctggatacgcgt 17281189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 49 - 228
Target Start/End: Complemental strand, 17290132 - 17289952
Alignment:
Q  49 aagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgag--acttggggattaagtcgacttaatcctcaagtaaacgcgt 146  Q
    |||||||||||||| ||| |||||||||| ||| ||||||||||||||||||   |||  ||||||||||||||||| |||||| || ||||||||||||    
T  17290132 aagaatgagtggggcgagatctccttttacagggagagttcgtaacaaaaaaaacgagtgacttggggattaagtcggcttaattctgaagtaaacgcgt 17290033  T
Q  147 tttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttac 228  Q
    |||||||||||||||||||||||| ||| ||| || | ||||||||| ||||||||||||||||||||| ||||||||||||    
T  17290032 tttgtttcttaattggatatatccggaagcttttgaaaacgcgttttagatcgggtcggatcgtaacaa-tttatttgttac 17289952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 11956506 - 11956334
Alignment:
Q  15 agcataggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttgggg 114  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||  | |||||  ||    
T  11956506 agcacaggaatcatcaactgtgaatttcggtgtaaagaatgagtggggagagctctccttttataggtagagttcgtaacaaaaaacgagtgacttaagg 11956407  T
Q  115 attaagtcgacttaatcctcaagtaaacgcgttt-tgtttcttaattggatatatccagaaacttctggatac 186  Q
    ||||||||  ||||||||| ||| || ||| ||| ||||||||| |||||||||||| |||| ||||||||||    
T  11956406 attaagtcagcttaatccttaagcaaccgcatttatgtttcttagttggatatatccggaaaattctggatac 11956334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 10485472 - 10485555
Alignment:
Q  145 gttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttac 228  Q
    ||||||||||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10485472 gttttgtttcttaatagaatatatccggaaacttctgaatacgcgttttggatcgggtcggatcgtaacaattttatttgttac 10485555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 29325831 - 29325915
Alignment:
Q  15 agcataggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaa 100  Q
    |||| |||||||||| ||| ||||||||||||| |||||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  29325831 agcacaggaatcatcaactatgaatttcggtgtaaagaatgagtgggg-gagctctccttttataggctgagttcgtaacaaaaaa 29325915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 29326006 - 29326090
Alignment:
Q  15 agcataggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaa 100  Q
    |||| |||||||||| ||| ||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  29326006 agcacaggaatcatcaactatgaatttcgctgtaaagaatgagtgggg-gagctctccttttataggcagagttcgtaacaaaaaa 29326090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 3902573 - 3902699
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagt 121  Q
    |||||||| |||||||||||| |||| ||||||||||| || || ||||||||||||||| |||||||||||||||||||  | ||||   |||||||||    
T  3902573 gaatcatcaactgtgaatttcagtgtaaagaatgagtgcgg-gaactctccttttataggcagagttcgtaacaaaaaacgagtgactcaaggattaagt 3902671  T
Q  122 cgacttaatcctcaagtaaacgcgtttt 149  Q
    |  ||||||||| ||| |||| ||||||    
T  3902672 cagcttaatccttaagcaaacacgtttt 3902699  T

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Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 3902215 - 3902391
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagt 121  Q
    |||||||| | |||||||||| |||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||   | ||||   |||||||||    
T  3902215 gaatcatcaattgtgaatttcagtgtaaagaatgagtgggg-gaactctccttttataggcagagttcgtaacaaaaaatgagtgactcaaggattaagt 3902313  T
Q  122 c-gacttaatcctcaagtaaacgcg-ttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatc 198  Q
    | ||||||||||| ||| |||| || |||||||||  | ||||||||||||  |||  || |||||||||||| |||||    
T  3902314 ctgacttaatccttaagcaaacacgtttttgtttc-aagttggatatatccgtaaaaatccggatacgcgtttaggatc 3902391  T

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Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 19478445 - 19478514
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttc 89  Q
    |||||||||| |||| ||| |||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  19478445 aggaatcatcaactgcgaaattcggtgtgaagaatgaggggggcgagctctccttttataggaagagttc 19478514  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 256
Target Start/End: Original strand, 19478512 - 19478606
Alignment:
Q  152 ttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttacttgtagcactttcggataatgat 251  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||||          ||| |||||||||||||||  |||||||||||||||||||||    
T  19478512 ttcttaattggatatatccgaaaacttctggatactcgttttggatcg----------taaaaattttatttgttacgcgtagcactttcggataatgat 19478601  T

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Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 10485382 - 10485436
Alignment:
Q  34 gtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagtt 88  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||    
T  10485382 gtgaatttcggtgtgaagaatgagtggggcgagctctccttttacagggagagtt 10485436  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 5600754 - 5600690
Alignment:
Q  35 tgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaa 99  Q
    |||||||||| || |||||| |||| ||  ||||||||||||||||| |||||| ||||||||||    
T  5600754 tgaatttcggagtaaagaataagtgaggcaagctctccttttatagggagagtttgtaacaaaaa 5600690  T

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Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 31030826 - 31031006
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaa 119  Q
    |||||||||||||| || | |||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||  |  |||| ||||||||    
T  31030826 aggaatcatcgactatggaattcggtgtaaagaatgaggggggcgagctctccttttataggaggagttcgtaacaaaaaacgagttacttagggattaa 31030925  T
Q  120 gtcgacttaatcctcaagtaaacgcg-ttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcg 199  Q
    |||  ||||||||| ||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  31030926 gtctgcttaatccttaagcaaacgcgtttttgtttcttaatttgatatatccggaaacttctggatactcgttttggatcg 31031006  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 19430309 - 19430494
Alignment:
Q  20 aggaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaa 119  Q
    |||||||||| |||| ||| |||| ||| ||||||||| |||| ||||||||||||||||||| |||||| |||||||||||  |  |||| ||||||||    
T  19430309 aggaatcatcaactgcgaaattcgatgtaaagaatgaggggggcgagctctccttttataggaggagttcataacaaaaaacgagttacttagggattaa 19430408  T
Q  120 gtcgacttaatcctcaagtaaacgcgttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcgga 206  Q
    |||  ||||||||| ||| ||||||||||| | | |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19430409 gtctgcttaatccttaagcaaacgcgtttt-tgttttaattggatatatccggaaacttctggatactcgttttggatcgggtcgga 19430494  T

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Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 19566460 - 19566643
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagt 121  Q
    |||||||| |||| ||| |||| ||| ||||||||| |||| ||||||||||||||||||| |||||| |||||||||||  |  |||| ||||||||||    
T  19566460 gaatcatcaactgcgaaattcgatgtaaagaatgaggggggcgagctctccttttataggaggagttcataacaaaaaacgagttacttagggattaagt 19566559  T
Q  122 cgacttaatcctcaagtaaacgcgttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcgga 206  Q
    |  ||||||||| ||| ||||||||||| | | |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19566560 ctgcttaatccttaagcaaacgcgtttt-tgttttaattggatatatccggaaacttctggatactcgttttggatcgggtcgga 19566643  T

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Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 33616522 - 33616395
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagt 121  Q
    ||||||||||||||| | |||||||| ||||||||| |||| ||||||||||||||||||| |||||| |||||||||||  |  |||| ||||||||||    
T  33616522 gaatcatcgactgtggaattcggtgtaaagaatgaggggggcgagctctccttttataggaggagttcataacaaaaaacgagttacttagggattaagt 33616423  T
Q  122 cgacttaatcctcaagtaaacgcgtttt 149  Q
    |  ||||||||| ||| |||||||||||    
T  33616422 ctgcttaatccttaagcaaacgcgtttt 33616395  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 19435858 - 19435909
Alignment:
Q  155 ttaattggatatatccagaaacttctggatacgcgttttggatcgggtcgga 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19435858 ttaattggatatatccggaaacttctggatactcgttttggatcgggtcgga 19435909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 19572007 - 19572058
Alignment:
Q  155 ttaattggatatatccagaaacttctggatacgcgttttggatcgggtcgga 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19572007 ttaattggatatatccggaaacttctggatactcgttttggatcgggtcgga 19572058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 33848315 - 33848386
Alignment:
Q  31 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagag-ttcgtaacaaaaaac 101  Q
    ||||||||||||||||| |||||| |||| || |||||||||||||||||| |||| |||||||||||||||    
T  33848315 actgtgaatttcggtgtaaagaataagtgaggcgagctctccttttatagggagagtttcgtaacaaaaaac 33848386  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 42914999 - 42915082
Alignment:
Q  94 caaaaaacttgagacttggggattaagtcgacttaatcctcaagtaaacgcgttttgtttcttaattggatatatccagaaact 177  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42914999 caaaaaacgagagacttggggattaagtcggcttaatcctcaagtaaacgcgttttgtttcttaattggatatatccggaaact 42915082  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 5089595 - 5089654
Alignment:
Q  40 ttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaa 99  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| ||||    
T  5089595 ttcggtgtaaagaatgaggggggcgagctctccttttataggaagagttcgtaacgaaaa 5089654  T

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Target: scaffold0067 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 33761 - 33629
Alignment:
Q  22 gaatcatcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagt 121  Q
    |||||||| | |||||||||| |||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| |  | |||||  |||||||||    
T  33761 gaatcatcaaatgtgaatttcagtgttaagaatgagtggggtgagctctccttttataggcatagttcgtaacaaaaatcgagtgacttaaggattaagt 33662  T
Q  122 cgacttaatcctcaag-taaacgcgttttgttt 153  Q
    | |||||||||| ||| ||||| ||||||||||    
T  33661 caacttaatccttaagctaaacacgttttgttt 33629  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 31987029 - 31987101
Alignment:
Q  26 catcgactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaa 98  Q
    |||| |||||||| ||||| || |||||| |||| || |||||||||||||||||  ||||||||||||||||    
T  31987029 catcaactgtgaacttcggcgtaaagaataagtgaggcgagctctccttttatagtgagagttcgtaacaaaa 31987101  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 7805409 - 7805464
Alignment:
Q  64 gagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaag 120  Q
    ||||||||||||||||||| ||||||||||| ||||||  || ||||||||||||||    
T  7805409 gagctctccttttataggaggagttcgtaac-aaaaacgagatacttggggattaag 7805464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 13582479 - 13582395
Alignment:
Q  31 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttgggga 115  Q
    |||||||| |||| ||||   |||||| || | ||||||||||||||||||| |||||| |||||||||||  ||| ||||||||    
T  13582479 actgtgaaattcgatgtgttaaatgaggggagcgagctctccttttataggaggagttcataacaaaaaacgagagtcttgggga 13582395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 43413 - 43478
Alignment:
Q  33 tgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaa 98  Q
    |||| ||||| ||||||||||| |||| || | | |||||||||||||  ||||||||||||||||    
T  43413 tgtgtatttcagtgtgaagaataagtgtggcgggatctccttttatagtgagagttcgtaacaaaa 43478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 121170 - 121210
Alignment:
Q  15 agcataggaatcatcgactgtgaatttcggtgtgaagaatg 55  Q
    |||||||||| |||| |||||||||||||||||| ||||||    
T  121170 agcataggaagcatcaactgtgaatttcggtgtgtagaatg 121210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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