View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9708_low_19 (Length: 253)
Name: NF9708_low_19
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 28095491 - 28095267
Alignment:
| Q |
14 |
agacactgatttcatctcatggaataacaattcaacttttaataactctaaatattgatttttcatttgtcccaaagaaaaagttaatatcatcgattaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28095491 |
agacactgatttcatctcatggaataacaattcaacttttaataactctaaatgttgatttttcatttgtcccaaagaaaaagttaatatcatcgattaa |
28095392 |
T |
|
| Q |
114 |
taaacgatgccgaaaccaatacatgaaaacatttgtcactatgcaacatcaacttagagctcccaaaccataagagtaaaaaacagtcattagtacctca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28095391 |
taaacgatgccgaaaccaatacatgaaaacatttgtcactatgcaacatcaacttagagctcccaaaccataagagtaaaaaactgtcattagtacctca |
28095292 |
T |
|
| Q |
214 |
tacattgttttttgtaggacctttg |
238 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
28095291 |
tacattgttttttgtaggacctttg |
28095267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University