View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_low_2 (Length: 459)
Name: NF9708_low_2
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 34316647 - 34316204
Alignment:
| Q |
1 |
actctagctttctttatgaaagtttgatctaagaatacttggtcatcatgtttactatcaaaatctttccttttcttcattaagttcatttcttttccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316647 |
actctagctttctttatgaaagtttgatctaagaatacttggtcatcatgtttactatcaaaatctttccttttcttcattaagttcatttcttttccta |
34316548 |
T |
|
| Q |
101 |
cagcaaacaggttaccatcatcagtgtgatctgatccattcctcattaagtgaattccctcaagactttcaaattctcttgcctcacgtattctttttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316547 |
cagcaaacaggttaccatcatcagtgtgatctgatccattcctcattaagtgaattccctcaagactttcaaattctcttgcctcacgtattctttttct |
34316448 |
T |
|
| Q |
201 |
taagacatgttgccatatgtttcgcacttctttcatccttataggcttaagcaaataatcacatgctccatgttgaacacctttcatcaccctgcttgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316447 |
taagacatgttgccatatgtttcgcacttctttcatccttataggcttaagcaaataatcacatgctccatgttgaacacctttcatcaccctgcttgtt |
34316348 |
T |
|
| Q |
301 |
tctccatcaacagacatcactacataacattatcaagtgttgttagaaatatcatggaattttagtcaataaaatcaaaatactatgtatatatattgta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316347 |
tctccatcaacagacatcactacataacattatcaagtgttgttagaaatatcatggaattttagtcaataaaatcaaaatactatgtatatatattgta |
34316248 |
T |
|
| Q |
401 |
acaccccctcgtccatcttttttcggaccaagaatgttacttgt |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316247 |
acaccccctcgtccatcttttttcggaccaagaatgttacttgt |
34316204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 167 - 321
Target Start/End: Original strand, 38953054 - 38953208
Alignment:
| Q |
167 |
tttcaaattctcttgcctcacgtattctttttcttaagacatgttgccatatgtttcgcacttctttcatccttataggcttaagcaaataatcacatgc |
266 |
Q |
| |
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||||||||||||| |||| |||| |||||||| ||||||||||||||||| ||||||| |||||||||||||| |||||||| | |||||||||||| |
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| T |
38953054 |
tttcaaattctctaacctcgtgtatcctttttctgaagacatgttgccatatatttcgcaactctttcatccttatgggcttaaggagataatcacatgc |
38953153 |
T |
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| Q |
267 |
tccatgttgaacacctttcatcaccctgcttgtttctccatcaacagacatcact |
321 |
Q |
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|| ||||| || ||||||||||||||||||||||||||||| || ||||||||| |
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| T |
38953154 |
accgtgttggacgcctttcatcaccctgcttgtttctccatccacggacatcact |
38953208 |
T |
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