View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9708_low_22 (Length: 250)

Name: NF9708_low_22
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9708_low_22
NF9708_low_22
[»] chr2 (3 HSPs)
chr2 (113-236)||(3826759-3826882)
chr2 (1-87)||(3826909-3826996)
chr2 (4-36)||(8430368-8430400)
[»] chr7 (2 HSPs)
chr7 (164-236)||(33838972-33839044)
chr7 (4-36)||(48933212-48933244)
[»] chr6 (5 HSPs)
chr6 (169-236)||(6819427-6819494)
chr6 (194-236)||(6819375-6819417)
chr6 (4-32)||(1954956-1954984)
chr6 (4-36)||(5360485-5360517)
chr6 (4-36)||(12351617-12351649)
[»] scaffold0087 (1 HSPs)
scaffold0087 (4-36)||(37818-37850)
[»] chr8 (2 HSPs)
chr8 (4-36)||(9631478-9631510)
chr8 (4-36)||(19256286-19256318)
[»] chr5 (2 HSPs)
chr5 (4-36)||(16121870-16121902)
chr5 (4-36)||(20187972-20188004)
[»] chr4 (2 HSPs)
chr4 (4-36)||(32175768-32175800)
chr4 (4-36)||(46286260-46286292)
[»] chr3 (2 HSPs)
chr3 (4-36)||(11007714-11007746)
chr3 (4-36)||(17582332-17582364)
[»] chr1 (3 HSPs)
chr1 (4-36)||(12720885-12720917)
chr1 (4-36)||(16913608-16913640)
chr1 (4-36)||(17661126-17661158)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 3826882 - 3826759
Alignment:
Q  113 agccttagaagtatgatgaggcagaagtgagttgagcttctggtagagagctttcatttgatttcttctattcctttcaacgaattttctgtcaactctg 212  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3826882 agccttagaagtttgatgaggcagaagtgagttgagcttctggcagagagctttcatttgatttcttctattcctttcaacgaattttctgtcaactctg 3826783  T
Q  213 gatgaactagggttgttctccatc 236  Q
    ||||||||||||||||||||||||    
T  3826782 gatgaactagggttgttctccatc 3826759  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 3826996 - 3826909
Alignment:
Q  1 ttcttgtgacgaattttattttttccgtcactaattctannnnnnnn-cctagtataattaactaagcatctaagagaataaaggagt 87  Q
    |||||||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  3826996 ttcttgtgacaaattttattttttccgtcactaattctatttttttttcctagtataattaactaagcatctaagagaataaaggagt 3826909  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 8430368 - 8430400
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  8430368 ttgtgaggaattttattttttccgtcactaatt 8430400  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 33838972 - 33839044
Alignment:
Q  164 tttcatttgatttcttctattcctttcaacgaattttctgtcaactctggatgaactagggttgttctccatc 236  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||||||||    
T  33838972 tttcatttgatttcttctattcctttcaatgaattttctgtcaattctggatgaactagagttattctccatc 33839044  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 48933212 - 48933244
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  48933212 ttgtgaggaattttattttttccgtcactaatt 48933244  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 6819494 - 6819427
Alignment:
Q  169 tttgatttcttctattcctttcaacgaattttctgtcaactctggatgaactagggttgttctccatc 236  Q
    |||||||||||||||||||||||| |||||| | ||||| |||||||||| | ||||| |||| ||||    
T  6819494 tttgatttcttctattcctttcaatgaatttccagtcaattctggatgaattcgggttattcttcatc 6819427  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 6819417 - 6819375
Alignment:
Q  194 gaattttctgtcaactctggatgaactagggttgttctccatc 236  Q
    |||||||||||||| |||||||||||||||||| |||||||||    
T  6819417 gaattttctgtcaattctggatgaactagggttattctccatc 6819375  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 1954956 - 1954984
Alignment:
Q  4 ttgtgacgaattttattttttccgtcact 32  Q
    |||||||||||||||||||||||||||||    
T  1954956 ttgtgacgaattttattttttccgtcact 1954984  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 5360485 - 5360517
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  5360485 ttgtgaggaattttattttttccgtcactaatt 5360517  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 12351649 - 12351617
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  12351649 ttgtgaggaattttattttttccgtcactaatt 12351617  T

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Target: scaffold0087 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 37850 - 37818
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  37850 ttgtgaggaattttattttttccgtcactaatt 37818  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 9631478 - 9631510
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  9631478 ttgtgaggaattttattttttccgtcactaatt 9631510  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 19256286 - 19256318
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  19256286 ttgtgaggaattttattttttccgtcactaatt 19256318  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 16121902 - 16121870
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  16121902 ttgtgaggaattttattttttccgtcactaatt 16121870  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 20188004 - 20187972
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  20188004 ttgtgaggaattttattttttccgtcactaatt 20187972  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 32175800 - 32175768
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  32175800 ttgtgaggaattttattttttccgtcactaatt 32175768  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 46286292 - 46286260
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  46286292 ttgtgaggaattttattttttccgtcactaatt 46286260  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 11007746 - 11007714
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    ||||||||||||| |||||||||||||||||||    
T  11007746 ttgtgacgaatttcattttttccgtcactaatt 11007714  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 17582364 - 17582332
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  17582364 ttgtgaggaattttattttttccgtcactaatt 17582332  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 12720885 - 12720917
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  12720885 ttgtgaggaattttattttttccgtcactaatt 12720917  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 16913640 - 16913608
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  16913640 ttgtgaggaattttattttttccgtcactaatt 16913608  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 17661126 - 17661158
Alignment:
Q  4 ttgtgacgaattttattttttccgtcactaatt 36  Q
    |||||| ||||||||||||||||||||||||||    
T  17661126 ttgtgaggaattttattttttccgtcactaatt 17661158  T

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