View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9708_low_26 (Length: 238)

Name: NF9708_low_26
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9708_low_26
NF9708_low_26
[»] chr4 (26 HSPs)
chr4 (1-143)||(22375902-22376047)
chr4 (1-142)||(54508575-54508718)
chr4 (1-141)||(18493797-18493942)
chr4 (1-141)||(34021312-34021458)
chr4 (5-87)||(4608113-4608195)
chr4 (5-87)||(23237526-23237608)
chr4 (5-141)||(27512854-27512994)
chr4 (10-87)||(32595112-32595189)
chr4 (10-87)||(39606311-39606388)
chr4 (10-76)||(44222960-44223026)
chr4 (23-76)||(13768529-13768582)
chr4 (8-87)||(20618746-20618825)
chr4 (23-76)||(46721870-46721923)
chr4 (10-87)||(21733870-21733947)
chr4 (23-72)||(43892884-43892933)
chr4 (5-64)||(18502008-18502067)
chr4 (10-76)||(30226670-30226736)
chr4 (23-84)||(8762860-8762921)
chr4 (10-87)||(20167499-20167576)
chr4 (23-72)||(23609297-23609346)
chr4 (23-76)||(32824627-32824680)
chr4 (32-72)||(37927787-37927827)
chr4 (98-141)||(4608056-4608099)
chr4 (97-138)||(23237622-23237663)
chr4 (23-83)||(16608609-16608669)
chr4 (100-144)||(39606405-39606449)
[»] chr1 (17 HSPs)
chr1 (1-141)||(50099538-50099681)
chr1 (1-141)||(50303939-50304083)
chr1 (5-87)||(36156962-36157044)
chr1 (5-87)||(44592577-44592659)
chr1 (5-76)||(27773554-27773625)
chr1 (5-72)||(43022554-43022621)
chr1 (5-87)||(43410927-43411009)
chr1 (23-76)||(10619794-10619847)
chr1 (23-76)||(44429839-44429892)
chr1 (23-73)||(39618463-39618513)
chr1 (23-76)||(7493398-7493451)
chr1 (23-76)||(15757407-15757460)
chr1 (7-86)||(6764477-6764556)
chr1 (10-85)||(26632988-26633062)
chr1 (97-141)||(44592518-44592562)
chr1 (10-57)||(29681098-29681145)
chr1 (23-84)||(10989478-10989539)
[»] chr3 (15 HSPs)
chr3 (1-86)||(26769826-26769911)
chr3 (5-87)||(22775269-22775351)
chr3 (10-87)||(37057514-37057591)
chr3 (5-85)||(37224382-37224462)
chr3 (7-73)||(30500933-30500999)
chr3 (23-73)||(35238736-35238786)
chr3 (23-76)||(46823535-46823588)
chr3 (23-73)||(17653349-17653399)
chr3 (98-138)||(26770308-26770348)
chr3 (10-76)||(52724605-52724671)
chr3 (23-76)||(30342664-30342717)
chr3 (23-75)||(15871364-15871416)
chr3 (25-76)||(35734441-35734492)
chr3 (97-133)||(22775366-22775402)
chr3 (97-133)||(37224332-37224368)
[»] chr6 (8 HSPs)
chr6 (5-87)||(7590504-7590586)
chr6 (23-76)||(3886141-3886194)
chr6 (23-76)||(583320-583373)
chr6 (26-76)||(13703075-13703125)
chr6 (23-76)||(29363906-29363959)
chr6 (28-76)||(30386828-30386876)
chr6 (23-73)||(34729509-34729559)
chr6 (11-67)||(5122304-5122360)
[»] chr2 (15 HSPs)
chr2 (10-141)||(2096034-2096169)
chr2 (23-76)||(1043355-1043408)
chr2 (23-76)||(9190344-9190397)
chr2 (24-76)||(36314577-36314629)
chr2 (23-73)||(1593092-1593142)
chr2 (10-76)||(21613376-21613442)
chr2 (10-76)||(41732625-41732691)
chr2 (23-85)||(14160593-14160655)
chr2 (35-76)||(5382702-5382743)
chr2 (23-76)||(10585101-10585154)
chr2 (8-76)||(9754040-9754107)
chr2 (25-85)||(14950634-14950694)
chr2 (23-84)||(8230407-8230468)
chr2 (23-84)||(35524944-35525005)
chr2 (48-76)||(12563840-12563868)
[»] chr5 (10 HSPs)
chr5 (5-142)||(39570763-39570903)
chr5 (10-87)||(6735901-6735978)
chr5 (10-76)||(21360905-21360971)
chr5 (23-76)||(17769338-17769391)
chr5 (12-87)||(12947310-12947386)
chr5 (40-87)||(42092340-42092387)
chr5 (12-67)||(12933097-12933152)
chr5 (23-77)||(13517243-13517296)
chr5 (23-76)||(39685690-39685744)
chr5 (23-84)||(3498715-3498776)
[»] chr8 (9 HSPs)
chr8 (142-224)||(42446040-42446122)
chr8 (10-87)||(33538374-33538451)
chr8 (26-141)||(33538390-33538509)
chr8 (23-76)||(18606019-18606072)
chr8 (23-76)||(21441955-21442008)
chr8 (23-76)||(4072589-4072642)
chr8 (23-76)||(41323543-41323596)
chr8 (23-73)||(10713855-10713905)
chr8 (23-83)||(1233787-1233847)
[»] chr7 (21 HSPs)
chr7 (10-87)||(23333318-23333395)
chr7 (5-76)||(27571611-27571682)
chr7 (5-72)||(33036092-33036159)
chr7 (7-73)||(2410955-2411021)
chr7 (5-87)||(27098897-27098979)
chr7 (5-87)||(27179324-27179406)
chr7 (23-76)||(45810001-45810054)
chr7 (10-76)||(41532412-41532478)
chr7 (23-76)||(83979-84032)
chr7 (5-76)||(38892159-38892229)
chr7 (23-73)||(48609467-48609517)
chr7 (23-76)||(758572-758625)
chr7 (7-56)||(19532357-19532406)
chr7 (23-76)||(33335986-33336039)
chr7 (23-76)||(46212038-46212091)
chr7 (7-73)||(36558351-36558417)
chr7 (7-76)||(37205792-37205860)
chr7 (35-76)||(39719311-39719352)
chr7 (27-75)||(2826749-2826797)
chr7 (10-57)||(5437160-5437207)
chr7 (23-84)||(45855378-45855439)
[»] scaffold0049 (2 HSPs)
scaffold0049 (23-76)||(46875-46928)
scaffold0049 (23-76)||(15003-15056)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 22375902 - 22376047
Alignment:
Q  1 tgactacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa---nnnnnnnnng 97  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  22375902 tgactacatctaaaatcgaacctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataattttttttttttg 22376001  T
Q  98 gggtagccatagctacccctctctttaacaagcatttgcccctgct 143  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  22376002 gggtagccatagctacccctctctttaacaagcattcgcccctgct 22376047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 54508575 - 54508718
Alignment:
Q  1 tgactacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaat--aannnnnnnnngg 98  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||          |    
T  54508575 tgactacatctaaaatcgaacctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataaaatttttttttcg 54508674  T
Q  99 ggtagccatagctacccctctctttaacaagcatttgcccctgc 142  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  54508675 ggtagccatagctacccctctctttaacaagcattcgcccctgc 54508718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 18493797 - 18493942
Alignment:
Q  1 tgactacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaa-----taannnnnnnn 95  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |              
T  18493797 tgactacatctaaaatcgaacctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaatttttttttttttttt 18493896  T
Q  96 nggggtagccatagctacccctctctttaacaagcatttgcccctg 141  Q
     ||||||||||||||||||||||||||||||||||||| |||||||    
T  18493897 tggggtagccatagctacccctctctttaacaagcattcgcccctg 18493942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 34021312 - 34021458
Alignment:
Q  1 tgactacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa------nnnnnnn 94  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||                 
T  34021312 tgactacatctaaaatcgaacctggggtagccaaatatatactattaggggtagctaaacataaaaatatacctacaaattcaataattttttttttttt 34021411  T
Q  95 nnggggtagccatagctacccctctctttaacaagcatttgcccctg 141  Q
      |||||||||||| |||||||||||||||||||||||| |||||||    
T  34021412 ttggggtagccataactacccctctctttaacaagcattcgcccctg 34021458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 4608195 - 4608113
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4608195 tacatctaaaatcgaacttgaggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 4608113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 23237526 - 23237608
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23237526 tacatctaaaatcgaacttggggcagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 23237608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 27512994 - 27512854
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa----nnnnnnnnngggg 100  Q
    |||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||             ||||    
T  27512994 tacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactcaataaaatttatttttttgggg 27512895  T
Q  101 tagccatagctacccctctctttaacaagcatttgcccctg 141  Q
    ||||||||||||||||||||||  ||||||||| |||||||    
T  27512894 tagccatagctacccctctcttgtacaagcattggcccctg 27512854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 32595112 - 32595189
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  32595112 ctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactcaataa 32595189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 39606311 - 39606388
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  39606311 ctaaaatcgaacttgaggtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactcaataa 39606388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 44222960 - 44223026
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||||||||||  ||||| | |||||||||||||||||||||||| |||||||||||||||||||||    
T  44222960 ctaaaatcgaacttggggcaaccaaatatatattattaggggtagttaaacataaaaatatacctac 44223026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 13768582 - 13768529
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  13768582 tggggtagctaaatatatattattaggggtagctaaatataaaaatatacctac 13768529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 20618825 - 20618746
Alignment:
Q  8 atctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    |||||||||  ||| ||||||||||||| |||||||||||||||||||| || | ||||||||||||||  |||||||||    
T  20618825 atctaaaattaaatttggggtagccaaacatatattattaggggtagcttaatacaaaaatatacctactcattcaataa 20618746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 46721923 - 46721870
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||| |||||    
T  46721923 tggggtagctaaatatatattattaggggtagctaaaaataaaaatatccctac 46721870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 21733947 - 21733870
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    |||||||| ||  |||||||||||| |||||||||||||||||||||||| ||| |  |||||||||  |||||||||    
T  21733947 ctaaaatcaaacttggggtagccaactatatattattaggggtagctaaatatatatgtatacctacttattcaataa 21733870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 43892884 - 43892933
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatac 72  Q
    ||||| ||| ||||||||||||||||||||||||||| ||||||||||||    
T  43892884 tggggcagctaaatatatattattaggggtagctaaatataaaaatatac 43892933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 18502067 - 18502008
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataa 64  Q
    |||| |||||||||||  | ||||||||||||||||||||| |||||||| |||||||||    
T  18502067 tacacctaaaatcgaacttagggtagccaaatatatattatcaggggtagttaaacataa 18502008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 30226670 - 30226736
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||| |||||  ||||||| ||||||||||||||||||| ||||| ||| |||| |||||||||||    
T  30226670 ctaaagtcgaacatggggtaaccaaatatatattattaggagtagccaaatataataatatacctac 30226736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 8762860 - 8762921
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaa 84  Q
    ||||||||| |||||| | ||||| |||||||||||| ||||||||||||| ||| ||||||    
T  8762860 tggggtagctaaatattttttatttggggtagctaaatataaaaatataccaacatattcaa 8762921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 20167576 - 20167499
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    |||||||| ||  ||||||||||||||||||||||  || ||||||| || |||||||||||| |||  |||||||||    
T  20167576 ctaaaatcaaacttggggtagccaaatatatattaccagaggtagcttaatataaaaatatacttactcattcaataa 20167499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 23609297 - 23609346
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatac 72  Q
    |||| ||||||||||||||||||||||| |||| ||| ||||||||||||    
T  23609297 tgggatagccaaatatatattattagggatagcaaaatataaaaatatac 23609346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 32824627 - 32824680
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||| ||||||||||| ||||| ||||||||| |||| ||||||||||||||||    
T  32824627 tgggatagccaaatatttattactaggggtagttaaatataaaaatatacctac 32824680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 37927827 - 37927787
Alignment:
Q  32 caaatatatattattaggggtagctaaacataaaaatatac 72  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  37927827 caaatatatattattatgggtagctaaatataaaaatatac 37927787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 4608099 - 4608056
Alignment:
Q  98 gggtagccatagctacccctctctttaacaagcatttgcccctg 141  Q
    |||||||||||||||||||||||||  ||||||||| |||||||    
T  4608099 gggtagccatagctacccctctcttatacaagcattcgcccctg 4608056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 23237622 - 23237663
Alignment:
Q  97 ggggtagccatagctacccctctctttaacaagcatttgccc 138  Q
    ||||||||||||||||||||||||||  ||||||||| ||||    
T  23237622 ggggtagccatagctacccctctcttgtacaagcattcgccc 23237663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 16608609 - 16608669
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattca 83  Q
    |||||||||  ||||| ||||||| |||||||||||| ||||| ||||||| || ||||||    
T  16608609 tggggtagctcaatatttattatttggggtagctaaatataaatatataccaaccaattca 16608669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 39606405 - 39606449
Alignment:
Q  100 gtagccatagctacccctctctttaacaagcatttgcccctgcta 144  Q
    ||||||||||||||||||||| |  ||||||||| ||||||||||    
T  39606405 gtagccatagctacccctctcctgtacaagcattcgcccctgcta 39606449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 50099681 - 50099538
Alignment:
Q  1 tgactacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa---nnnnnnnnng 97  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  50099681 tgactacatctaaaatcgaacctggggtagtcaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataattttttttttttg 50099582  T
Q  98 gggtagccatagctacccctctctttaacaagcatttgcccctg 141  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  50099581 gggtagccatagctacccctctctttaacaagcattcgcccctg 50099538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 50303939 - 50304083
Alignment:
Q  1 tgactacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaat----aannnnnnnnn 96  Q
    |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||             
T  50303939 tgactacatctaaaatcgaacctgagatagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataaaaaaaaaaaaatt 50304038  T
Q  97 ggggtagccatagctacccctctctttaacaagcatttgcccctg 141  Q
    |||||||||||| |||||||||||||||||||||||| |||||||    
T  50304039 ggggtagccataactacccctctctttaacaagcattcgcccctg 50304083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 36156962 - 36157044
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    |||| ||||||| |||  |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  36156962 tacacctaaaattgaacttggggtagccaaatatatattattaggggtagctaagcataaaaatatacctataaattcaataa 36157044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 44592659 - 44592577
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    |||| |||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  44592659 tacacctaaaatcaaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactcaataa 44592577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 27773625 - 27773554
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||| |||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27773625 tacacctaaaatcgaacttggggtaggcaaatatatattattaggggtagctaaacataaaaatatacctac 27773554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 43022621 - 43022554
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatac 72  Q
    ||||||||||||||||  | |||||||||||||||||||||||||||||| |||||||||||||||||    
T  43022621 tacatctaaaatcgaactttgggtagccaaatatatattattaggggtagttaaacataaaaatatac 43022554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 43411009 - 43410927
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    ||||||||||||| ||  | ||||| |||||||||||||||||||| |||||||| |||||||||||||||| || |||||||    
T  43411009 tacatctaaaatcaaacttagggtaaccaaatatatattattagggatagctaaatataaaaatatacctactaactcaataa 43410927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 10619847 - 10619794
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  10619847 tggggtagctaaatatatattattaggggtagctaaatataaaaatatacctac 10619794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 44429839 - 44429892
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  44429839 tggggtagccaaataaatattattaggggtagctaaatataaaaatatacctac 44429892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 39618463 - 39618513
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 73  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||    
T  39618463 tggggtagccaaatatatattattaggggtagcttaatataaaaatatacc 39618513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 7493451 - 7493398
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||||||||||||||||||||||| | |||||||||| ||||||||||||||||    
T  7493451 tggggtagccaaatatatattattggaggtagctaaatataaaaatatacctac 7493398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 15757460 - 15757407
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||  |||||||||||||||||||||| |||| ||||||||||||||||    
T  15757460 tggggtagttaaatatatattattaggggtagataaatataaaaatatacctac 15757407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 6764556 - 6764477
Alignment:
Q  7 catctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaata 86  Q
    ||||||||||  ||| |||| ||||||||||||||||||||| ||||||| || | |||||||||| |||  ||||||||    
T  6764556 catctaaaattaaatttgggatagccaaatatatattattagcggtagcttaatacaaaaatatacatactcattcaata 6764477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 26633062 - 26632988
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaat 85  Q
    |||||||||||  || |||| ||||||||||||||||| || || |||||||||||||||||||||| || |||||    
T  26633062 ctaaaatcgaacttgaggtaaccaaatatatattattaagg-taactaaacataaaaatatacctactaactcaat 26632988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 44592562 - 44592518
Alignment:
Q  97 ggggtagccatagctacccctctctttaacaagcatttgcccctg 141  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||    
T  44592562 ggggtagccatagctacccctctcttgtacaagcattcgcccctg 44592518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 29681145 - 29681098
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagcta 57  Q
    |||||||| ||  ||||||||||||||||||||||| |||||||||||    
T  29681145 ctaaaatcaaacttggggtagccaaatatatattatcaggggtagcta 29681098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 10989478 - 10989539
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaa 84  Q
    ||||||||| |||||| | ||||| |||||||||||| ||||||| ||||| ||| ||||||    
T  10989478 tggggtagctaaatattttttatttggggtagctaaatataaaaacataccaacatattcaa 10989539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 26769826 - 26769911
Alignment:
Q  1 tgactacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaata 86  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26769826 tgactacatctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaata 26769911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 22775269 - 22775351
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    |||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22775269 tacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 22775351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 37057591 - 37057514
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  37057591 ctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactcaataa 37057514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 37224462 - 37224382
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaat 85  Q
    |||| |||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  37224462 tacacctaaaatcgaacttgggatagccaaatatatattattaggggtagctaaacataaaaatatacctactaactcaat 37224382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 30500933 - 30500999
Alignment:
Q  7 catctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 73  Q
    ||||||||||| ||  ||||||||||| |||||||||||||||||||||| || |||||||||||||    
T  30500933 catctaaaatcaaacttggggtagccagatatatattattaggggtagcttaatataaaaatatacc 30500999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 35238736 - 35238786
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 73  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||    
T  35238736 tggggtagccaaatatatattattaggggtagcttaatataaaaatatacc 35238786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 46823588 - 46823535
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  46823588 tggggtagctaattatatattattaggggtagctaaatataaaaatatacctac 46823535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 17653349 - 17653399
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 73  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||||||||    
T  17653349 tggggtagctaaatatatattattaggggtagttaaatataaaaatatacc 17653399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 26770308 - 26770348
Alignment:
Q  98 gggtagccatagctacccctctctttaacaagcatttgccc 138  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  26770308 gggtagccatagctacccctctctttaacaagcattcgccc 26770348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 52724671 - 52724605
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||| |||||  |||||||||||||||||||||||||||| |||  ||| |||| |||||||||||    
T  52724671 ctaaagtcgaacatggggtagccaaatatatattattagggatagtcaaatataataatatacctac 52724605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 30342717 - 30342664
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||| |||||||||||||||| ||||| |||| |||||||||| |||||    
T  30342717 tggggtagctaaatatatattattagaggtagttaaaaataaaaatatccctac 30342664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 15871364 - 15871416
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatataccta 75  Q
    |||| |||||||||||| |||| || ||||||||||| |||||||||||||||    
T  15871364 tgggatagccaaatataaattactaagggtagctaaatataaaaatataccta 15871416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 35734441 - 35734492
Alignment:
Q  25 gggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||| ||||| ||||||||| ||||| ||||| ||||||||||||||||    
T  35734441 gggtagctaaatacatattattaagggtaactaaatataaaaatatacctac 35734492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 22775366 - 22775402
Alignment:
Q  97 ggggtagccatagctacccctctctttaacaagcatt 133  Q
    ||||||||||||||||||||||||||  |||||||||    
T  22775366 ggggtagccatagctacccctctcttgtacaagcatt 22775402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 37224368 - 37224332
Alignment:
Q  97 ggggtagccatagctacccctctctttaacaagcatt 133  Q
    ||||||||||||||||||||||||||  |||||||||    
T  37224368 ggggtagccatagctacccctctcttgtacaagcatt 37224332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 7590504 - 7590586
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7590504 tacatctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 7590586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 3886194 - 3886141
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3886194 tggggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 3886141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 583320 - 583373
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  583320 tggggtaaccaaatatatattattaggggtagctaaatataaaaatatacctac 583373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 13703125 - 13703075
Alignment:
Q  26 ggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  13703125 ggtagctaaatatatattattaggggtagctaaatataaaaatatacctac 13703075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 29363906 - 29363959
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  29363906 tggggtagctaaatatatattattaggagtagctaaatataaaaatatacctac 29363959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 30386828 - 30386876
Alignment:
Q  28 tagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  30386828 tagctaaatatatattattaggggtagctaaatataaaaatatacctac 30386876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 34729559 - 34729509
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 73  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  34729559 tggggtagctaaatatatactattaggggtagctaaatataaaaatatacc 34729509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 5122304 - 5122360
Alignment:
Q  11 taaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaa 67  Q
    ||||||||||  |||||||| |||| ||||||||||||||||| ||| | |||||||    
T  5122304 taaaatcgaacttggggtagtcaaaaatatattattaggggtaactatatataaaaa 5122360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 2096169 - 2096034
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa----nnnnnnnnnggggtagcc 105  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||    
T  2096169 ctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataaaatttatttttttggggtagcc 2096070  T
Q  106 atagctacccctctctttaacaagcatttgcccctg 141  Q
    |||||||||||||||||  ||||||||| |||||||    
T  2096069 atagctacccctctcttgtacaagcattcgcccctg 2096034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 1043355 - 1043408
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  1043355 tggggtagccaaataaatattattaggggtagctaaatataaaaatatacctac 1043408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 9190344 - 9190397
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  9190344 tggggtagccaaataaatattattaggggtagctaaatataaaaatatacctac 9190397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 36314577 - 36314629
Alignment:
Q  24 ggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  36314577 ggggtagccaaatatatattattaggggtaactaaatataaaaatatacctac 36314629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 1593092 - 1593142
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 73  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  1593092 tggggtagccaaatatatattattaggggtaactaaatataaaaatatacc 1593142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 21613376 - 21613442
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||| ||| |||| |||||||||||    
T  21613376 ctaaagtcgaacatggggtagccaaatatatattattaggggtagccaaatataataatatacctac 21613442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 41732625 - 41732691
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||||| | ||||||| ||||||||    
T  41732625 ctaaaatctaacttggggtagccaaatatatattattaggggtagctacatataaaaacatacctac 41732691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 14160593 - 14160655
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaat 85  Q
    |||||||||||| |||||||||||||||||||||||  ||| ||||||||||||  |||||||    
T  14160593 tggggtagccaactatatattattaggggtagctaagtatacaaatatacctacttattcaat 14160655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 5382702 - 5382743
Alignment:
Q  35 atatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  5382702 atatatattattaggggtagctaaatataaaaatatacctac 5382743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 10585154 - 10585101
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||| |||||    
T  10585154 tgggatagctaaatatatattattaggggtagctaaaaataaaaatatccctac 10585101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 9754107 - 9754040
Alignment:
Q  8 atctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||||||||| ||| |||| ||||||| ||||||||||||  |||||||||| ||||||||||||||||    
T  9754107 atctaaaatcaaatttggg-tagccaattatatattattaacggtagctaaatataaaaatatacctac 9754040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 14950634 - 14950694
Alignment:
Q  25 gggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaat 85  Q
    |||||||||| ||| |||||||||||||||||||  ||| ||||||||||||  |||||||    
T  14950634 gggtagccaactatgtattattaggggtagctaagtatacaaatatacctacttattcaat 14950694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 8230407 - 8230468
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaa 84  Q
    ||||||||| |||||| | ||||| |||||||||||| ||||||| ||||| ||| ||||||    
T  8230407 tggggtagctaaatattttttatttggggtagctaaatataaaaacataccaacatattcaa 8230468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 35524944 - 35525005
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaa 84  Q
    ||||||||| |||||| | ||||| |||||||||||| ||||||| ||||| ||| ||||||    
T  35524944 tggggtagctaaatattttttatttggggtagctaaatataaaaacataccaacatattcaa 35525005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 12563840 - 12563868
Alignment:
Q  48 ggggtagctaaacataaaaatatacctac 76  Q
    |||||||||||||||||||||||||||||    
T  12563840 ggggtagctaaacataaaaatatacctac 12563868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 39570903 - 39570763
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa---nnnnnnnnnggggt 101  Q
    |||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||            |||||    
T  39570903 tacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactcaataattttttttttttggggt 39570804  T
Q  102 agccatagctacccctctctttaacaagcatttgcccctgc 142  Q
    |||||||||||||||||||||  ||||||||| ||||||||    
T  39570803 agccatagctacccctctcttgtacaagcattcgcccctgc 39570763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 6735978 - 6735901
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    |||||||||||  |||||||||||||||||||||||||| |||||||||| |||||||||||||||| || |||||||    
T  6735978 ctaaaatcgaacttggggtagccaaatatatattattagaggtagctaaatataaaaatatacctactaactcaataa 6735901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 21360971 - 21360905
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| ||| |||| |||||||||||    
T  21360971 ctaaaatcgaacatggggtagccaaatatatattattaggggtagccaaatataataatatacctac 21360905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 17769338 - 17769391
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  17769338 tggggtagctaaatatatattattaggggtagctaaatataaaaatatacctac 17769391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 12947310 - 12947386
Alignment:
Q  12 aaaatcgaatctggggtagccaaatatatattattaggggtagctaaacat-aaaaatatacctacaaattcaataa 87  Q
    |||||||||  ||||||||| |||||||||||||||| ||||||||||||| |||||||||||||| || |||||||    
T  12947310 aaaatcgaacttggggtagcaaaatatatattattagaggtagctaaacataaaaaatatacctactaactcaataa 12947386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 42092340 - 42092387
Alignment:
Q  40 tattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||    
T  42092340 tattattaggggtagctaaacataaaaatatacctactaactcaataa 42092387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 12933097 - 12933152
Alignment:
Q  12 aaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaa 67  Q
    |||||||||  ||||||| | |||||||||||||||| ||||||||||||||||||    
T  12933097 aaaatcgaacttggggtaacaaaatatatattattagaggtagctaaacataaaaa 12933152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 13517296 - 13517243
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctaca 77  Q
    ||||||||  |||||||||||||||||| |||||||| |||||||||||||||||    
T  13517296 tggggtagttaaatatatattattaggg-tagctaaatataaaaatatacctaca 13517243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 39685690 - 39685744
Alignment:
Q  23 tggggtagccaaatatatattattag-gggtagctaaacataaaaatatacctac 76  Q
    ||||||||| |||||||||||||||| || |||||||| ||||||||||||||||    
T  39685690 tggggtagctaaatatatattattagaggatagctaaatataaaaatatacctac 39685744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 3498715 - 3498776
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaa 84  Q
    ||||||||| |||||| | ||||| |||||||||||| ||||||| ||||| ||| ||||||    
T  3498715 tggggtagctaaatattttttatttggggtagctaaatataaaaacataccaacatattcaa 3498776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 42446040 - 42446122
Alignment:
Q  142 ctaacaagtgcttagaagcattagtgcccgaagtacacgacatttcattgtgttagatgcattatttttgagataaagtttct 224  Q
    |||||||||  |||||||||||||| ||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42446040 ctaacaagtatttagaagcattagttccttaagtacacgacatttcattgtgttggatgcattatttttgagataaagtttct 42446122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 33538374 - 33538451
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    |||||||||||   | |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33538374 ctaaaatcgaactcgaggtaaccaaatatatattattaggagtagctaaacataaaaatatacctacaaattcaataa 33538451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 33538390 - 33538509
Alignment:
Q  26 ggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataannnnnnnnn----ggggtagccatagctacccctctct 121  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  33538390 ggtaaccaaatatatattattaggagtagctaaacataaaaatatacctacaaattcaataatttttttttttttggggtagccatagctacccctctct 33538489  T
Q  122 ttaacaagcatttgcccctg 141  Q
    |  |||||| || |||||||    
T  33538490 tgtacaagccttcgcccctg 33538509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 18606072 - 18606019
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18606072 tggggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 18606019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 21441955 - 21442008
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  21441955 tggggtagctaaatatatattattaggggtagctaaatataaaaatatacctac 21442008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 4072589 - 4072642
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  4072589 tggggtagctaattatatattattaggggtagctaaatataaaaatatacctac 4072642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 41323543 - 41323596
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  41323543 tggggtagctaattatatattattaggggtagctaaatataaaaatatacctac 41323596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 10713905 - 10713855
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 73  Q
    |||||||||||||| |||||||| |||||||| | || |||||||||||||    
T  10713905 tggggtagccaaatgtatattataaggggtagtttaatataaaaatatacc 10713855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 1233787 - 1233847
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattca 83  Q
    |||||||||  ||||| ||||||| |||||||||||| ||||| ||||||| || ||||||    
T  1233787 tggggtagctcaatatttattatttggggtagctaaatataaatatataccaaccaattca 1233847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 23333318 - 23333395
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  23333318 ctaaaatcgaacttggagtagccaaatatatattattaggggtagctaaacataaaaatatacctactaactcaataa 23333395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 27571611 - 27571682
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||| |||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571611 tacacctaaaatcgaacatagggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 27571682  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 33036092 - 33036159
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatac 72  Q
    |||| |||||||||||  ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  33036092 tacacctaaaatcgaacttggggtagccaaatatatattatcaggggtagttaaacataaaaatatac 33036159  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 2411021 - 2410955
Alignment:
Q  7 catctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 73  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||||| || |||||||||||||    
T  2411021 catctaaaatcaaatttggagtagccaaatatatattattaggggtagcttaatataaaaatatacc 2410955  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 27098897 - 27098979
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    ||||| ||||||  ||| |||| |||||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||    
T  27098897 tacatttaaaattaaatttgggatagccaaatatatattattaggggtagctaaacataaatataaacctactaactcaataa 27098979  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 27179406 - 27179324
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaataa 87  Q
    ||||| ||||||  ||| |||| |||||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||    
T  27179406 tacatttaaaattaaatttgggatagccaaatatatattattaggggtagctaaacataaatataaacctactaactcaataa 27179324  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 45810001 - 45810054
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  45810001 tggggtagccaaatatatattattgggggtagctaaatataaaaatatacctac 45810054  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 41532478 - 41532412
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||| ||| |||| |||||||||||    
T  41532478 ctaaagtcgaacatggggtagccaaatatatattattaggggtagccaaatataataatatacctac 41532412  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 83979 - 84032
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||    
T  83979 tggggtaactaaatatatattattaggggtagctaaatataaaaatatacctac 84032  T

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Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 38892159 - 38892229
Alignment:
Q  5 tacatctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||| |||||||||||  |||||||  |||||||||||||| |||| |||||||||||||||||||||||||    
T  38892159 tacacctaaaatcgaacttggggtaatcaaatatatattatcaggg-tagctaaacataaaaatatacctac 38892229  T

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Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 48609467 - 48609517
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 73  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||||||||    
T  48609467 tggggtagctaaatatatattattaggggtagttaaatataaaaatatacc 48609517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 758625 - 758572
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||    
T  758625 tggggtagctaaatatatattattaagggtagataaatataaaaatatacctac 758572  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 19532357 - 19532406
Alignment:
Q  7 catctaaaatcgaatctggggtagccaaatatatattattaggggtagct 56  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||||||    
T  19532357 catctaaaatcaaatttggggtagccaaatatatattattaagggtagct 19532406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 33335986 - 33336039
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||  ||||||||||||||||||||||||||| ||||| ||||||||||    
T  33335986 tggggtagttaaatatatattattaggggtagctaaatataaatatatacctac 33336039  T

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Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 46212038 - 46212091
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||| ||||||||||||||||  ||||||||| ||||||||||||||||    
T  46212038 tggggtagctaaatatatattattagaagtagctaaatataaaaatatacctac 46212091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 36558417 - 36558351
Alignment:
Q  7 catctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 73  Q
    ||||||||||| ||  || ||||||||||||||||||||||||||||  | || |||||||||||||    
T  36558417 catctaaaatcaaacttgaggtagccaaatatatattattaggggtaatttaatataaaaatatacc 36558351  T

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Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 37205792 - 37205860
Alignment:
Q  7 catctaaaatcgaatctggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||||| || || ||||||||||||||||||||| |||| ||||| || ||||||||| ||||||    
T  37205792 catctaaaatcaaa-cttgggtagccaaatatatattataagggatagcttaatataaaaataaacctac 37205860  T

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Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 39719352 - 39719311
Alignment:
Q  35 atatatattattaggggtagctaaacataaaaatatacctac 76  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  39719352 atatatattattagggatagctaaatataaaaatatacctac 39719311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 2826797 - 2826749
Alignment:
Q  27 gtagccaaatatatattattaggggtagctaaacataaaaatataccta 75  Q
    ||||| |||||||||||||||| | |||||||| |||||||||||||||    
T  2826797 gtagctaaatatatattattagagatagctaaatataaaaatataccta 2826749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 5437160 - 5437207
Alignment:
Q  10 ctaaaatcgaatctggggtagccaaatatatattattaggggtagcta 57  Q
    |||||||| ||  ||||||||||||||||||||||| |||||||||||    
T  5437160 ctaaaatcaaacttggggtagccaaatatatattatcaggggtagcta 5437207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 45855439 - 45855378
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctacaaattcaa 84  Q
    |||||||||  ||||| ||||||| |||||||||||| ||||| ||||||| || |||||||    
T  45855439 tggggtagctcaatatttattatttggggtagctaaatataaatatataccgaccaattcaa 45855378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 46928 - 46875
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46928 tggggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 46875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 15056 - 15003
Alignment:
Q  23 tggggtagccaaatatatattattaggggtagctaaacataaaaatatacctac 76  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  15056 tggggtagctaaatatatattattaggggtagctaattataaaaatatacctac 15003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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