View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_low_28 (Length: 237)
Name: NF9708_low_28
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_28 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 31 - 237
Target Start/End: Original strand, 26497142 - 26497348
Alignment:
| Q |
31 |
ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacacaaacagaagctaccaacaagaaattgaagaagaagatcatcacatgattaa |
130 |
Q |
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| T |
26497142 |
ttcaggaagatggatgggtagtttgcagggtattcaaaaagaaaaacacaaacagaagctaccaacaagaaattgaagaagaagatcatcacatgattaa |
26497241 |
T |
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| Q |
131 |
ccacatgagatcaacaaatggtccaaatcattttctagaaccaaaacatcatcatcacatgcaacaactaggactatatgattacaacaataacaccacc |
230 |
Q |
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| T |
26497242 |
ccacatgagatcaacaaatggtccaaatcattttctagaaccaaaacatcatcatcacatgcaacaactaggactatatgattacaacaataacaccacc |
26497341 |
T |
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| Q |
231 |
accacct |
237 |
Q |
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||||||| |
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| T |
26497342 |
accacct |
26497348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26496971 - 26497006
Alignment:
| Q |
1 |
atcgtcttgatgatgatgataatgcagaagttcagg |
36 |
Q |
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| T |
26496971 |
atcgtcttgatgatgatgataatgcagaagttcagg |
26497006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 24640706 - 24640657
Alignment:
| Q |
31 |
ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca |
80 |
Q |
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| T |
24640706 |
ttcagaaagatggatgggtagtacgcagggtattcaaaaagataaacaca |
24640657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 26080358 - 26080398
Alignment:
| Q |
31 |
ttcaggaagatggatgggtagtatgcagggtattcaaaaag |
71 |
Q |
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| T |
26080358 |
ttcagaaagatggatgggtagtacgcatggtattcaaaaag |
26080398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 23611717 - 23611668
Alignment:
| Q |
31 |
ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca |
80 |
Q |
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| T |
23611717 |
ttcagaaagatggatgggtagtacgcatggtattcaaaaagataaacaca |
23611668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 23843113 - 23843064
Alignment:
| Q |
31 |
ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca |
80 |
Q |
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| T |
23843113 |
ttcagaaagatggatgggtagtacgcatggtattcaaaaagataaacaca |
23843064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 12277317 - 12277360
Alignment:
| Q |
34 |
aggaagatggatgggtagtatgcagggtattcaaaaagaaaaac |
77 |
Q |
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| T |
12277317 |
aggaagatggatgggtggtatgcagggtgttcaagaagaaaaac |
12277360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 17558113 - 17558162
Alignment:
| Q |
31 |
ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca |
80 |
Q |
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| T |
17558113 |
ttcagaaagatggatgggtagtacgcatggtattcaaaaaggtaaacaca |
17558162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 52475793 - 52475842
Alignment:
| Q |
31 |
ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca |
80 |
Q |
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| T |
52475793 |
ttcagaaagatggatgggtagtacgcatggtattcaaaaaggtaaacaca |
52475842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 3962 - 3913
Alignment:
| Q |
31 |
ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca |
80 |
Q |
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| T |
3962 |
ttcagaaagatggatgggtagtacgcatggtattcaaaaaggtaaacaca |
3913 |
T |
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