View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_low_29 (Length: 236)
Name: NF9708_low_29
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 45312780 - 45312983
Alignment:
| Q |
14 |
cagagataattcaagtcaattttgaggaagccaataatatgttttccttctcattctttacaaattgagtttttgtcaaattcacgattttctcaaggaa |
113 |
Q |
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| T |
45312780 |
cagagataattcaagtcaattttgaggaagccaataatatgttttccttctcattctttacaaattgagtttttgtcaaattcacgattttctcaaggaa |
45312879 |
T |
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| Q |
114 |
gctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttcttcacgcttgctgctatctcaatccttacatccat |
213 |
Q |
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| T |
45312880 |
gctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttctttacgcttgctgctatctcaatccttacatcctt |
45312979 |
T |
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| Q |
214 |
tatt |
217 |
Q |
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|||| |
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| T |
45312980 |
tatt |
45312983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 27758540 - 27758671
Alignment:
| Q |
86 |
ttgtcaaattcacgattttctcaaggaagctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttcttcacgc |
185 |
Q |
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| T |
27758540 |
ttgtctaattcacgattttctcaaggaagctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttcttcacgc |
27758639 |
T |
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| Q |
186 |
ttgctgctatctcaatccttacatccattatt |
217 |
Q |
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| T |
27758640 |
ttgctgctatctcgatccttacatccgttatt |
27758671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 27758441 - 27758512
Alignment:
| Q |
16 |
gagataattcaagtcaattttgaggaagccaataatatgttttccttctcattctttacaaattgagttttt |
87 |
Q |
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| T |
27758441 |
gagataattcaagtcaatttttaggaagccaataatatattttccttctcattctttacacattaagttttt |
27758512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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