View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_low_3 (Length: 453)
Name: NF9708_low_3
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 8585315 - 8584891
Alignment:
| Q |
18 |
caatgaactttagttactcatgtgtttgtagtatatattttatgaattattttcaattttagaaccatcatttgttgacgaatgcatggcgcaactcatc |
117 |
Q |
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| T |
8585315 |
caatgaactttagttactcatgtgtttgtagtatatattttatgaattattttcaattttagaaccatcatttgttgtcgaatgcatggcgcaactcatc |
8585216 |
T |
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| Q |
118 |
aatgaggtttgaaattgaagagagtgtatatatagtttgattaattttcttatgattatgcatgtgaaatgattaagatgcaaaatgaagcaagcgagac |
217 |
Q |
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| T |
8585215 |
aatgaggtttgaaattgaagagagtgtatatatagtttgattaattttcttatgattatgcatgtgaaatgattaagatgcaaaatgaagcaagcgagac |
8585116 |
T |
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| Q |
218 |
tggtcatgcacaatccaaagctggagcattagcagctgagctagaagaaacaaagcaaaaacttgaaggatcaaaagaagaagctaacttcttagcacaa |
317 |
Q |
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| T |
8585115 |
tggtcatgcacaatccaaagctggagcattagcagctgagctagaagaaacaaagcaaaaacttgaaggatcaaaagaagaagctaacttcttagcacaa |
8585016 |
T |
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| Q |
318 |
tgcatcaaatccctcaagaaagaacttgagcaaacaaagaaagaattggaagaaacaaaggcaagagagttgaagttgcttcaacgacgtgatattccag |
417 |
Q |
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| T |
8585015 |
tgcatcaaatccctcaagaaagaacttgagcaaacaaagaaagaattggaagaaacaaaggcaagagagtggaagttgcttcaacgacgtgatattccag |
8584916 |
T |
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| Q |
418 |
agacaaacgaagacatcaagttcat |
442 |
Q |
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| T |
8584915 |
agacaaacgaagacatcaagttcat |
8584891 |
T |
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