View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_low_31 (Length: 213)
Name: NF9708_low_31
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 39973883 - 39974066
Alignment:
| Q |
14 |
cagagaaatgacacatgggcatgtaaatttattagtctaccaaaaacacttcatgtgaatgctacagttacat--acatatttatttcaccaacgctgga |
111 |
Q |
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| T |
39973883 |
cagagaaatgacacatgggcatgtaaatttattagtctaccaaaaacacttcatgtgaatgctacagttacatgtacatatttatttcaccaacgctgga |
39973982 |
T |
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| Q |
112 |
tgctatgttaatgccaaaacttttcaccaaatgtatggcacaggtgatcatgagcaacagttcaatttcacaggggaataataa |
195 |
Q |
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| T |
39973983 |
tgctatgttaatgccaaaacttttcaccaaatgtatggcacaggtgatcatgatcaacaattcaatttcacaggggaataataa |
39974066 |
T |
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