View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_low_32 (Length: 210)
Name: NF9708_low_32
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 35094890 - 35095046
Alignment:
| Q |
21 |
agcgcagctcctgctccaaaaacatcaaaacctttaaatttgaaatcaactgcagctgatgctgctgctgcccgggataccactgcagctcctgcaccca |
120 |
Q |
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| T |
35094890 |
agcgcagctcctgctccaaaaacatcaaaacctttaaatttgaaatcaactgcagctgatgctgctgctgcccaggataccactgcagctcctgcaccca |
35094989 |
T |
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| Q |
121 |
ctacaagggccaaacccttgttagctggcagatgtcggggagccaaacctgctgctc |
177 |
Q |
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| T |
35094990 |
ctacaagggccaaacccttgttagctggcagatgtcggggagccaaacctgctgctc |
35095046 |
T |
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Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 177
Target Start/End: Original strand, 32587348 - 32587501
Alignment:
| Q |
24 |
gcagctcctgctccaaaaacatcaaaacctttaaatttgaaatcaactgcagctgatgctgctgctgcccgggataccactgcagctcctgcacccacta |
123 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||| || || || || ||| || || | | ||| | ||| |||||||||||| ||||||| |
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| T |
32587348 |
gcagctcctgctccaacaacatcaagacctttaaatttgaattcgacaacaactaatgatgatgatccatgggctgccattgcagctcctgcgcccacta |
32587447 |
T |
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| Q |
124 |
caagggccaaacccttgttagctggcagatgtcggggagccaaacctgctgctc |
177 |
Q |
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| T |
32587448 |
caagggccaggcccttagcagctggcagaggtcggggagccaaacctgctgctc |
32587501 |
T |
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