View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_low_4 (Length: 448)
Name: NF9708_low_4
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 435
Target Start/End: Original strand, 38122326 - 38122745
Alignment:
| Q |
19 |
ttaaaggggcatgaaactgagagttatcaagaagccattagggttcttgatattatcttgagacaacatggtgctaaacagtacgtactttcataactac |
118 |
Q |
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| T |
38122326 |
ttaaaggggcatgaagctgagaattatcaagaagccattagggttcttgatattatcttgagacaacattctgccaaacagtgcgtgcttgcataactaa |
38122425 |
T |
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| Q |
119 |
atgtatttttt-atgtaatatagaataacaacagtaataatatctttgtaatatctatcgcaggggctgtctgctagtgcgccaaaatttctttcacaac |
217 |
Q |
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| T |
38122426 |
atgcattttttcatgtaatatagaataacaacagtaataatatcttggtattatctattgcaggggctgtctgcttgtgcgccaaaatttctttcacaac |
38122525 |
T |
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| Q |
218 |
gacccaaagaagttcaatgatgttggaggtggtgtacttggatgtaatgggctgcattccagtttcagaaccactcaaagtgaattgtctctgaacatag |
317 |
Q |
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| T |
38122526 |
gacccaaataatttgaatgatgttggaggtggtgtacttagttgcaaagggctgcattccagctttagaaccacacaaagtggattgtctctgaacatag |
38122625 |
T |
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| Q |
318 |
gtttgatcttgatgcctttgttg--tatatattctcatctgaataataatttctcgcatttcttatcttctgtcaatttgtttagatgtgtcgacatcca |
415 |
Q |
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| T |
38122626 |
gtttgatcttgatgcctttgttgtatatatattctcatctgaataataatttgtcacatttctttagttctttcaatttgtttagatgtgtcgacaacca |
38122725 |
T |
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| Q |
416 |
ttattgtacgtcctgggcct |
435 |
Q |
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| T |
38122726 |
tgattgtacgtcctgggcct |
38122745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 38113832 - 38114118
Alignment:
| Q |
19 |
ttaaaggggcatgaaactgagagttatcaagaagccattagggttcttgatattatcttgagacaacatggtgctaaacagtacgtacttt-cat--aac |
115 |
Q |
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| T |
38113832 |
ttaaaagggcatgaaactgagaattatcaagaagcgattagggttcttgacattatcttgaggcaacatgctgccaaacagtacgcgctttccattgtta |
38113931 |
T |
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| Q |
116 |
tacatgtatttttt--atgtaatatagaataacaacagtaataatatctttgtaat-atctatcgcaggggctgtctgctagtgcgccaaaatttctttc |
212 |
Q |
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| T |
38113932 |
taaatgtatttttttaatttaatataaaataacaagggcactaatatctttgtaataatctactgtaggggctgtctgcttgtccgccaaaactttttcc |
38114031 |
T |
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| Q |
213 |
acaacgacccaaagaagttcaatgatgttggaggtggtgtacttggatgtaatgggctgcattccagtttcagaaccactcaaagtg |
299 |
Q |
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| T |
38114032 |
acaatgatccgaaaaatttcacagatgtaggaggtggtgttcttggatgcagagggctgcattctagcttcaggaccacacaaagtg |
38114118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 22 - 407
Target Start/End: Original strand, 14914734 - 14915119
Alignment:
| Q |
22 |
aaggggcatgaaactgagagttatcaagaagccattagggttcttgatattatcttgagacaacatggtgctaaacagtacgtactttcataactacatg |
121 |
Q |
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| T |
14914734 |
aagggtcaagaaaccgagaattatcaagaagccctaagggttcttgatactatcttgagacaacatgctgccaaacagtgcgtgttttcattaatatatg |
14914833 |
T |
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| Q |
122 |
tattttttatgtaatatagaataacaacagtaataatatctttgtaatatctatcgcaggggctgtctgctagtgcgccaaaatttctttcacaacgacc |
221 |
Q |
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| T |
14914834 |
taattttaacttaatatcgaacaacaacattaataatatctttttaatatccatcgcagaggatgtttgcttgtgcgccaaagtttcttccataacgatc |
14914933 |
T |
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| Q |
222 |
caaagaagttcaatgatgttggaggtggtgtacttggatgtaatgggctgcattccagtttcagaaccactcaaagtgaattgtctctgaacataggttt |
321 |
Q |
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| T |
14914934 |
ccaggagtttcaagaatgtaggtggtggagtacttggatgcagagggttgcattcgagctttagaaccacacaaagtggactgtgtttgaatataggtta |
14915033 |
T |
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| Q |
322 |
gatcttgatgcctttgttgtatatattctcatctgaataataatttctcgca-tttcttatcttctgtcaatttgtttagatgtgtc |
407 |
Q |
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| T |
14915034 |
aatcttgatgcctttgtcg-ctatcttctcgtctgaataataatttttcgcacttccttaatttttttcaatttgtttagatgtgtc |
14915119 |
T |
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