View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_low_6 (Length: 399)
Name: NF9708_low_6
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 41327269 - 41326893
Alignment:
| Q |
1 |
accattacaaaatatcgttacagttcataatgacaaatggagattgtttttgtctttaaaaaatctatatgcatgagaatatcagattcaacttttttct |
100 |
Q |
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| T |
41327269 |
accattacaaaatatcgttacagttcataatgacaaatggagattgcttttgtctttaaaaaatctatgtgcatgagaatatcagattcaacttttttct |
41327170 |
T |
|
| Q |
101 |
ttctttctcattgtgaaattgcaacacttatagcactttgtttatctaccaaatgaccaatgtcgacaaatgaatctgatggctccataacttgaaataa |
200 |
Q |
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| T |
41327169 |
ttctttctcattgtgaaattgcaacacttatagcactttgtttatctaccaa--------tgtcgacaaatgaatttgatggctccataacttgaaataa |
41327078 |
T |
|
| Q |
201 |
attgaaaaggaaatagttgaaattagtttagtgttaggataagattgccaaccaacaaaccccgtgggtctac--gttttggcttaatagtttttcattt |
298 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41327077 |
attgaaaaggaaatagttgaaattggtttagtgttaggataagattgccaaccaacaaaccccgtgggtctacacgttttggcttaatagtttttcattt |
41326978 |
T |
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| Q |
299 |
ttcataatatatttcagctttcagtacggattaataattctaagaggaataaactctatttcagcttcaggaagaagctcaaatt |
383 |
Q |
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| T |
41326977 |
ttcataatatatttcagctttcagtacggattaataattctaagaggaataaactctatttcagcttcaggaagaagctcaaatt |
41326893 |
T |
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