View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9708_low_7 (Length: 397)

Name: NF9708_low_7
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9708_low_7
NF9708_low_7
[»] chr1 (12 HSPs)
chr1 (18-384)||(14504178-14504544)
chr1 (18-384)||(14467999-14468365)
chr1 (18-264)||(14483067-14483313)
chr1 (18-321)||(14522174-14522477)
chr1 (18-264)||(15017431-15017677)
chr1 (18-194)||(14532295-14532471)
chr1 (18-321)||(15011259-15011562)
chr1 (18-225)||(15002462-15002669)
chr1 (18-225)||(15037374-15037581)
chr1 (18-225)||(15032807-15033014)
chr1 (272-384)||(14482181-14482293)
chr1 (18-91)||(15041076-15041149)
[»] scaffold0400 (2 HSPs)
scaffold0400 (18-225)||(6843-7050)
scaffold0400 (18-210)||(13158-13350)
[»] scaffold0365 (2 HSPs)
scaffold0365 (18-225)||(7487-7694)
scaffold0365 (18-210)||(13801-13993)
[»] chr8 (2 HSPs)
chr8 (18-179)||(17027290-17027451)
chr8 (18-179)||(17557782-17557943)
[»] chr7 (10 HSPs)
chr7 (52-175)||(17848933-17849056)
chr7 (49-175)||(17825679-17825805)
chr7 (44-176)||(16103293-16103425)
chr7 (37-175)||(15664811-15664949)
chr7 (19-163)||(14606321-14606465)
chr7 (19-163)||(16025498-16025642)
chr7 (44-175)||(15676652-15676783)
chr7 (46-163)||(16172974-16173091)
chr7 (18-150)||(31103055-31103187)
chr7 (46-170)||(31058591-31058715)
[»] scaffold0289 (3 HSPs)
scaffold0289 (43-175)||(5143-5275)
scaffold0289 (43-175)||(13976-14108)
scaffold0289 (130-175)||(17772-17817)
[»] chr5 (1 HSPs)
chr5 (93-167)||(37027180-37027254)


Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 14504544 - 14504178
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14504544 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgttgtcaaactcttctgtggct 14504445  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgtttg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14504444 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgttcg 14504345  T
Q  218 aagttcgaaatagataataggaaatcccataaccaaataatgctaacnnnnnnntgcctagagtgatgggtaaaattaccaccaattttttgttagtctt 317  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  14504344 aagttcgaaatagataataggagatcccataaccaaataatgctaacaaaaaaatgcctagagtgatgggtaaaattaccaccaattttttgttagtctt 14504245  T
Q  318 atgagtattatggttcctattggatgttggacaaggctttaggctagaggcattaccacacaagtct 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14504244 atgagtattatggttcctattggatgttggacaaggctttaggctagatgcattaccacacaagtct 14504178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 14468365 - 14467999
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  14468365 cttcacagctacaacttgacctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccaatgagatgcttgttgtcaaactcttctgtggct 14468266  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgtttg 217  Q
    || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  14468265 tcaacaatgttttcatacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttctgttcg 14468166  T
Q  218 aagttcgaaatagataataggaaatcccataaccaaataatgctaacnnnnnnntgcctagagtgatgggtaaaattaccaccaattttttgttagtctt 317  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  14468165 aagttcgaaatagataataggagatcccataaccaaataatgctaacaaaaaaatgcctagagtgatgggtaaaattaccaccaattttttgttagtctt 14468066  T
Q  318 atgagtattatggttcctattggatgttggacaaggctttaggctagaggcattaccacacaagtct 384  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14468065 atgagtattagggttcctattggatgttggacaaggctttaggctagaagcattaccacacaagtct 14467999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 14483313 - 14483067
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |||| |||||||    
T  14483313 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttttgtggct 14483214  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgtttg 217  Q
    || | ||| || || ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  14483213 tcgataatgttctcgtacaccatttttcaatcaaaactccatattgaaaatagattttcagggtgtgattcttctgcaaccttggattcttttttgtttg 14483114  T
Q  218 aagttcgaaatagataataggaaatcccataaccaaataatgctaac 264  Q
    ||||||||||||||||||| || || |||||| ||||||||||||||    
T  14483113 aagttcgaaatagataatatgagataccataaacaaataatgctaac 14483067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 14522174 - 14522477
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    |||||||||||| || || ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||  |||| |||||| ||||||||||||    
T  14522174 cttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctgtggct 14522273  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgtttg 217  Q
    || |  ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| ||  |||||||| ||  ||||  |||||||||| |||    
T  14522274 tcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttg 14522373  T
Q  218 aagttcgaaatagataataggaaatcccataaccaaataatgctaacnnnnnnntgcctagagtgatgggtaaaattaccaccaattttttgttagtctt 317  Q
    |||| | | | |  |  || || ||||||||| ||||||||||||||        ||||||||||| || ||||| || ||||||  |||||||||| ||    
T  14522374 aagtgcaacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagtttt 14522473  T
Q  318 atga 321  Q
    ||||    
T  14522474 atga 14522477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 15017677 - 15017431
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || |||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||| ||||||    
T  15017677 cttcacagctacaacttgacctgaaggcaactctgctttgtaaacacttgcatgtcctccaaccccaatgagatgtttgttgtcaaaatcttccgtggct 15017578  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgtttg 217  Q
    || |  || || |||||||||||||| |||||||| |||||||||  ||||||||||||| | ||  |||||| ||||  |||| |||||| |||| |||    
T  15017577 tcgattatgttctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttctgtgcttg 15017478  T
Q  218 aagttcgaaatagataataggaaatcccataaccaaataatgctaac 264  Q
    |||||||| | | | | || || ||||||||| ||| ||||||||||    
T  15017477 aagttcgacaaaaaaagtatgagatcccataaacaattaatgctaac 15017431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 14532295 - 14532471
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| |||||| ||||||||||||    
T  14532295 cttcacagcaacaacttgacctgtaggcaactctgctttgtaaacacttccatgccctccaaccccaatgagatgcttgttgtcaaaatcttctgtggct 14532394  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgc 194  Q
    || | |||  | || |||||||||||||||||||| |||||||||| ||||||||||||||| ||  ||||||||||    
T  14532395 tcgataatggtctcgtacaccatttttccatcaaagctccatattgcaaatagattttcagtttgaaattcttctgc 14532471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 15011562 - 15011259
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || ||||||||||  ||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||| ||||||||||||    
T  15011562 cttcacagctacaacttgacctgtaggcagttctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttctgtggct 15011463  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgtttg 217  Q
    || |  || || |||||||||||||| |||||||| |||||||||  ||||||||||||| | ||  |||||| | ||  |||| ||||||||||| |||    
T  15011462 tcgattatgttctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtacaggcttgtattcttttgtgcttg 15011363  T
Q  218 aagttcgaaatagataataggaaatcccataaccaaataatgctaacnnnnnnntgcctagagtgatgggtaaaattaccaccaattttttgttagtctt 317  Q
    |||||||| | | |   || || ||||||||| ||| ||||||||||        ||||||||||| || || || || ||||||  |||||||||||||    
T  15011362 aagttcgacacaaaaggtatgagatcccataaacaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgttagtctt 15011263  T
Q  318 atga 321  Q
    ||||    
T  15011262 atga 15011259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 15002669 - 15002462
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || ||||||||||  ||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||| ||||||||||||    
T  15002669 cttcacagctacaacttgacctgtaggcagttctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttctgtggct 15002570  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgtttg 217  Q
    || |  || || || |||||||||||||||||||| |||||||||  ||||||||||||| | |   |||||| ||||  |||| ||||||||||| |||    
T  15002569 tcgattatgttctcgtacaccatttttccatcaaagctccatatttcaaatagattttcaattttcaattcttgtgcaggcttgtattcttttgtgcttg 15002470  T
Q  218 aagttcga 225  Q
    ||||||||    
T  15002469 aagttcga 15002462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 15037581 - 15037374
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||| ||||| ||||||    
T  15037581 cttcacagctacaacttgacctgtgggcaactctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttcagtggct 15037482  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgtttg 217  Q
    || | ||| || |||||||||||||| |||||||| |||||||||  ||||||||||||| | ||  |||||| |||   ||||  |||||||||| |||    
T  15037481 tcgataatgttctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtgctggcttgtgttcttttgtgcttg 15037382  T
Q  218 aagttcga 225  Q
    ||||||||    
T  15037381 aagttcga 15037374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 15033014 - 15032807
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| ||||| ||||||    
T  15033014 cttcacagctacaacttgacctgtgggcaactctgctttgtaaacacttccatgtcctccaaccccaaggagatgcttgtcgtcaaaatcttcagtggct 15032915  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgtttg 217  Q
    || |  || || || ||||||||||| |||||||| |||||||||  ||| ||||||||| | ||  |||||| ||||  |||| ||||||||| | |||    
T  15032914 tcgattatgttctcgtacaccattttgccatcaaagctccatatttcaaacagattttcaatttgaaattcttgtgcaggcttgtattcttttgcgcttg 15032815  T
Q  218 aagttcga 225  Q
    || |||||    
T  15032814 aaattcga 15032807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 272 - 384
Target Start/End: Complemental strand, 14482293 - 14482181
Alignment:
Q  272 tgcctagagtgatgggtaaaattaccaccaattttttgttagtcttatgagtattatggttcctattggatgttggacaaggctttaggctagaggcatt 371  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| || |   ||||||||||||||||||||||||||||||||||    
T  14482293 tgcctagagtgatgggtaaaactaccaccaactttttgttagtcttatgagtattatgttttccgctggatgttggacaaggctttaggctagaggcatt 14482194  T
Q  372 accacacaagtct 384  Q
    |||||||||||||    
T  14482193 accacacaagtct 14482181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 15041149 - 15041076
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagat 91  Q
    |||||||||||| || || || ||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  15041149 cttcacagctaccacttgaccagtaggcaactctgctttgtaatcacttccatgtactccaaccccaatgagat 15041076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 7050 - 6843
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    |||||| |||||||| |||||||| || ||||||||||||||||||||||| |||||||| | ||| |||||||| |||| |||||||||||| || |||    
T  7050 cttcaccgctacaacttgtcctgtggggaactctgctttgtaaacacttccgtgtcctcctatcccaatgagatgcttgttgtcaaactcttcagttgct 6951  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgtttg 217  Q
    || ||||| || |||||||||| |||||||||||| |||||||||| ||||||||||||||| ||  ||||| |||||  |||| ||||||||||| |||    
T  6950 tcaacaatgttctcatacaccaattttccatcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttg 6851  T
Q  218 aagttcga 225  Q
    ||||||||    
T  6850 aagttcga 6843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 13350 - 13158
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||| ||||||||||||    
T  13350 cttcacagctacaacttgacctgaaggcaactctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttctgtggct 13251  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattctttt 210  Q
    || |  || || ||||| ||||||||||||||||| |||||| ||| ||| ||||||||||| ||  ||||||||| |  |||| ||||||||    
T  13250 tcgattatgttctcatataccatttttccatcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttt 13158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 7694 - 7487
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    |||||| |||||||| |||||||| || ||||||||||||||||||||||| |||||||| | ||| |||||||| |||| |||||||||||| || |||    
T  7694 cttcaccgctacaacttgtcctgtggggaactctgctttgtaaacacttccgtgtcctcctatcccaatgagatgcttgttgtcaaactcttcagttgct 7595  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgtttg 217  Q
    || ||||| || |||||||||| |||||||||||| |||||||||| ||||||||||||||| ||  ||||| |||||  |||| ||||||||||| |||    
T  7594 tcaacaatgttctcatacaccaattttccatcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttg 7495  T
Q  218 aagttcga 225  Q
    ||||||||    
T  7494 aagttcga 7487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 13993 - 13801
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||| ||||||||||||    
T  13993 cttcacagctacaacttgacctgaaggcaactctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttctgtggct 13894  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattctttt 210  Q
    || |  || || ||||| ||||||||||||||||| |||||| ||| ||| ||||||||||| ||  ||||||||| |  |||| ||||||||    
T  13893 tcgattatgttctcatataccatttttccatcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttt 13801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 17027451 - 17027290
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| |||||  ||||||||||||||| ||||||||||||||| ||||||||||| |||||||  |||| |||||||||||| ||||||    
T  17027451 cttcacagctacaacttgtccaataggcaactctgcttggtaaacacttccatgacctccaaccccaatgagatacttgttgtcaaactcttcggtggct 17027352  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagt 179  Q
    || | ||| || ||||||||||||||||||||||| ||||||| || ||||||||| |||||    
T  17027351 tcgataatgttctcatacaccatttttccatcaaagctccatactgcaaatagattatcagt 17027290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 17557943 - 17557782
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| |||||  ||||||||||||||| ||||||||||||||| ||||||||||| |||||||  |||| |||||||||||| ||||||    
T  17557943 cttcacagctacaacttgtccaataggcaactctgcttggtaaacacttccatgacctccaaccccaatgagatacttgttgtcaaactcttcggtggct 17557844  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagt 179  Q
    || | ||| || ||||||||||||||||||||||| ||||||| || ||||||||| |||||    
T  17557843 tcgataatgttctcatacaccatttttccatcaaagctccatactgcaaatagattatcagt 17557782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 17849056 - 17848933
Alignment:
Q  52 gctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccatttttccatcaa 151  Q
    ||||||||||||||||| || ||||| || |||||||||||||| || ||||| |||||||||||||| | |||| | ||||||||||||||||||||||    
T  17849056 gctttgtaaacacttccctgccctcctactccgatgagatgtttatcatcaaaatcttctgtggcttcaataatactctcatacaccatttttccatcaa 17848957  T
Q  152 aactccatattgaaaatagatttt 175  Q
    |||||||||| | |||||||||||    
T  17848956 aactccatatggtaaatagatttt 17848933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 17825679 - 17825805
Alignment:
Q  49 tctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccatttttccat 148  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| || ||||||||||  | |||||| ||||||||||||||  |||    
T  17825679 tctgctttgtaaacacttccatgccctccaactccgatgagatgtttatcatcaaaatcgtctgtggcttgaataatattctcatacaccattttgtcat 17825778  T
Q  149 caaaactccatattgaaaatagatttt 175  Q
    ||||||||||||| | |||||||||||    
T  17825779 caaaactccatatggtaaatagatttt 17825805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 44 - 176
Target Start/End: Complemental strand, 16103425 - 16103293
Alignment:
Q  44 gcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccatttt 143  Q
    |||||| ||||||||| ||||||||||| || ||||| || || |||||||| || ||||| |||||||||||||| ||||| |||||| |||| |||||    
T  16103425 gcaactttgctttgtagacacttccatgccccccaacaccaattagatgtttctcatcaaaatcttctgtggcttccacaatgttttcaaacacaatttt 16103326  T
Q  144 tccatcaaaactccatattgaaaatagattttc 176  Q
    |||||||||  ||||||||| ||||| ||||||    
T  16103325 tccatcaaagttccatattgtaaatacattttc 16103293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 15664811 - 15664949
Alignment:
Q  37 cctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcataca 136  Q
    ||||| ||||||| |||||||||||||||||| ||  ||||  | || |||||||| ||||| ||||||||||| || ||||| | ||| || |||||||    
T  15664811 cctgtgggcaactttgctttgtaaacacttccttgcgctcctgctccaatgagatgcttgtcatcaaactcttccgttgcttcaataatgttctcataca 15664910  T
Q  137 ccatttttccatcaaaactccatattgaaaatagatttt 175  Q
    ||||||| ||||||||||||||||||| ||||| |||||    
T  15664911 ccattttcccatcaaaactccatattgtaaatacatttt 15664949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 14606465 - 14606321
Alignment:
Q  19 ttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggctt 118  Q
    |||||||| || || || |||||  |||||| ||||||||| ||||||||||| |||||||| || ||||||||||| || ||||| |||||||||||||    
T  14606465 ttcacagcaactacttgacctgtgtgcaactttgctttgtagacacttccatgccctccaactccaatgagatgtttttcatcaaaatcttctgtggctt 14606366  T
Q  119 ctacaatattttcatacaccatttttccatcaaaactccatattg 163  Q
    | | ||| || |||||||  | ||||||||||||  |||||||||    
T  14606365 ccaaaatgttctcatacaaaaattttccatcaaagttccatattg 14606321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 16025642 - 16025498
Alignment:
Q  19 ttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggctt 118  Q
    |||||||| || || || |||||  |||||| ||||||||| ||||||||||| |||||||| || ||||||||||| || ||||| |||||||||||||    
T  16025642 ttcacagcaactacttgacctgtgtgcaactttgctttgtagacacttccatgccctccaactccaatgagatgtttttcatcaaaatcttctgtggctt 16025543  T
Q  119 ctacaatattttcatacaccatttttccatcaaaactccatattg 163  Q
    | | ||| || |||||||  | ||||||||||||  |||||||||    
T  16025542 ccaaaatgttctcatacaaaaattttccatcaaagttccatattg 16025498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 15676652 - 15676783
Alignment:
Q  44 gcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccatttt 143  Q
    |||| ||||||||||||||  |||| ||  |||| || || |||||||| ||||| |||||||||| ||||||||| |  || || ||||||||||||||    
T  15676652 gcaaatctgctttgtaaacttttccttgcgctcctactccaatgagatgcttgtcatcaaactcttatgtggcttcaattatgttctcatacaccatttt 15676751  T
Q  144 tccatcaaaactccatattgaaaatagatttt 175  Q
     ||||||||||||||||||| ||||| |||||    
T  15676752 cccatcaaaactccatattgtaaatacatttt 15676783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 16173091 - 16172974
Alignment:
Q  46 aactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccatttttc 145  Q
    ||||||||||||||||||||||| || |||||||| || || |||| |||||| ||||| |||| ||||||||| |  || || || || ||||||||||    
T  16173091 aactctgctttgtaaacacttccttgccctccaactccaataagatatttgtcatcaaaatcttgtgtggcttccaagatgttctcgtagaccatttttc 16172992  T
Q  146 catcaaaactccatattg 163  Q
    |||| ||| |||||||||    
T  16172991 catcgaaattccatattg 16172974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 31103187 - 31103055
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||| ||||||  |||||||||||||||||| ||||||||| |||| || | |||||| || ||||||| |||||| ||||| |  || || |||    
T  31103187 cttcacagcaacaaccaatcctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatgagatatttgtcatcaaaattctcagtagct 31103088  T
Q  118 tctacaatattttcatacaccatttttccatca 150  Q
    || |  ||||||||| ||| |||||| ||||||    
T  31103087 tcaatgatattttcaaacatcattttcccatca 31103055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 31058715 - 31058591
Alignment:
Q  46 aactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccatttttc 145  Q
    |||||||| ||||||||| |||| || | ||| || || | ||||| |||||| ||||| | | | || ||||| | |||||||||| ||| ||||||||    
T  31058715 aactctgccttgtaaacatttccttgacttccgactccaacgagatatttgtcatcaaaatttgcagtagcttcaataatattttcaaacatcatttttc 31058616  T
Q  146 catcaaaactccatattgaaaatag 170  Q
    |||||  |||||| || ||||||||    
T  31058615 catcatgactccaaatggaaaatag 31058591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 5143 - 5275
Alignment:
Q  43 ggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccattt 142  Q
    |||||||||||||||||||||||||| ||  |||| |  || |||||||| ||||| |||||||||||||||||||| | ||| || |||||||||||||    
T  5143 ggcaactctgctttgtaaacacttccttgcgctcctagtccaatgagatgcttgtcatcaaactcttctgtggcttcaataatgttctcatacaccattt 5242  T
Q  143 ttccatcaaaactccatattgaaaatagatttt 175  Q
    | ||||||||||||||||| | ||||| |||||    
T  5243 tcccatcaaaactccatatagtaaatacatttt 5275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 13976 - 14108
Alignment:
Q  43 ggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccattt 142  Q
    |||||||||||||||||||||||||| ||  |||| |  || |||||||| ||||| |||||||||||||||||||| | ||| || |||||||||||||    
T  13976 ggcaactctgctttgtaaacacttccttgcgctcctagtccaatgagatgcttgtcatcaaactcttctgtggcttcaataatgttctcatacaccattt 14075  T
Q  143 ttccatcaaaactccatattgaaaatagatttt 175  Q
    | ||||||||||||||||| | ||||| |||||    
T  14076 tcccatcaaaactccatatagtaaatacatttt 14108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 17772 - 17817
Alignment:
Q  130 tcatacaccatttttccatcaaaactccatattgaaaatagatttt 175  Q
    |||||||||||||| ||||||||||||||||||| ||||| |||||    
T  17772 tcatacaccattttcccatcaaaactccatattgtaaatacatttt 17817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 37027254 - 37027180
Alignment:
Q  93 tttgtcgtcaaactcttctgtggcttctacaatattttcatacaccatttttccatcaaaactccatattgaaaa 167  Q
    |||||| ||||| || ||||||||||| |  ||||||||||| ||||||||||||||| |||||||||| |||||    
T  37027254 tttgtcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatatggaaaa 37027180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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