View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9708_low_8 (Length: 334)
Name: NF9708_low_8
Description: NF9708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9708_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 42634650 - 42634351
Alignment:
| Q |
16 |
caattggagacgatgtatcgacatatttagaaaaaattgtaaatgagtgcatcaaacttagtcttagctttaattctattagttttgctcatgttagacg |
115 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42634650 |
caattggagacgatgtatcgacatatttagaaacaattgtaaatgagtgcatcaaacttagtcttagctttaattctattagttttgctcatgttagacg |
42634551 |
T |
|
| Q |
116 |
cgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttggatcgaagaaactccatcctttttaatgaaattg |
215 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42634550 |
cgtggctaactatgctgcacattacttagcaaaatttgctcttttatccaattcggaccttgtttggatcgaagaaactccatcctttttaatgaaattg |
42634451 |
T |
|
| Q |
216 |
gtttcatttnnnnnnnnnnnnnnnttaacaatacaatagaaaactcaacttcttcgaaaaatatttgttttccattccattaactaccacattgccattt |
315 |
Q |
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| T |
42634450 |
gtttcatttaaaaaaaataaaaaattaacaatacaatagaaaactcaacttcttcaaaaaatatatgttttccattccattaactaacacattgccattt |
42634351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 25518326 - 25518169
Alignment:
| Q |
28 |
atgtatcgacatatttagaaaaaattgtaaatgagtgcatcaaacttagtcttagctttaattctattagttttgctcatgttagacgcgtggctaacta |
127 |
Q |
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||||||| || ||||||| || |||||||||||||||||||||||| |||| |||||||||||| ||||| |||||||||||||| || ||||||||| | |
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| T |
25518326 |
atgtatcaacctatttaggaacaattgtaaatgagtgcatcaaactaagtcctagctttaattcaattagctttgctcatgttaggcgtgtggctaacca |
25518227 |
T |
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| Q |
128 |
tgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttggatc |
185 |
Q |
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| T |
25518226 |
agctgcgcattacttagcaaaatttgctctttcatccaattcggactttgtttggatc |
25518169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 37433103 - 37433273
Alignment:
| Q |
28 |
atgtatcgacatatttagaaaaaattgtaaatgagtgcatcaaacttagtcttagctttaattctattagttttgctcatgttagacgcgtggctaacta |
127 |
Q |
| |
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|||||| ||| ||||||| || |||||||||||| |||||||| | |||| || |||||| | |||||| ||||||| |||||| || ||||||||| | |
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| T |
37433103 |
atgtattgacctatttaggaacaattgtaaatgaatgcatcaat-taagtcctaactttaactatattagctttgctcgtgttaggcgtgtggctaacca |
37433201 |
T |
|
| Q |
128 |
tgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttggatcgaagaaactccatc |
199 |
Q |
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| T |
37433202 |
agttgtgcattacttagcaaaatttgctctttcttccaattcagactttgtatggatcgaagaaaccccatc |
37433273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 31617004 - 31617054
Alignment:
| Q |
28 |
atgtatcgacatatttagaaaaaattgtaaatgagtgcatcaaacttagtc |
78 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||||||||| |||||||| |||| |
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| T |
31617004 |
atgtattgacctatttagaaacaattgtaaatgagtgtatcaaactaagtc |
31617054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 31617071 - 31617120
Alignment:
| Q |
135 |
cattacttagaaaaatttgctcttttatccaattcggaccttgtttggat |
184 |
Q |
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|
|||||||||| ||||||| ||||| ||||||||||||||| |||||||| |
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| T |
31617071 |
cattacttagcaaaattttatctttcatccaattcggacctagtttggat |
31617120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 7184928 - 7184768
Alignment:
| Q |
39 |
tatttagaaaaaattgtaaatgagtgcatcaaacttagtcttagctttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacatt |
138 |
Q |
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||||||| || ||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||| || ||||||||| | | ||| |||| |
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| T |
7184928 |
tatttaggaacaattgtaaatgagggcatcaaaccaagtcctagctttaactctattagttttgctcatgttaggcgtgtggctaaccaagttgcgcatt |
7184829 |
T |
|
| Q |
139 |
acttagaaaaatttgctcttttatccaattcggaccttgtttggatcgaagaaactccatc |
199 |
Q |
| |
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|| ||| ||||||| |||||| | | |||| | || |||||||||||||||||||||||| |
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| T |
7184828 |
acctagcaaaattttctctttcacctaatttgaactctgtttggatcgaagaaactccatc |
7184768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 30941983 - 30941892
Alignment:
| Q |
52 |
ttgtaaatgagtgcatcaaacttagtcttagctttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattactta |
143 |
Q |
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||||||| ||||| |||||||| | | |||||||||||||||||| ||||||||| ||||||| || |||||| | ||||||||||||||| |
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| T |
30941983 |
ttgtaaacgagtgtatcaaactaaattctagctttaattctattagctttgctcatattagacgtgtagctaaccaagctgcacattactta |
30941892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 20589198 - 20589313
Alignment:
| Q |
84 |
tttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttgga |
183 |
Q |
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||||||| |||||| ||| |||||||||| | ||||||||| | |||| ||||| |||| || ||||||||||| ||||||||| || || |||||| |
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| T |
20589198 |
tttaattttattagctttactcatgttaggtgtgtggctaaccaagctgagcattatttagcaatatttgctctttcatccaattcaaactttttttgga |
20589297 |
T |
|
| Q |
184 |
tcgaagaaactccatc |
199 |
Q |
| |
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|||||| ||||||||| |
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| T |
20589298 |
tcgaagtaactccatc |
20589313 |
T |
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