View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9709_high_1 (Length: 439)
Name: NF9709_high_1
Description: NF9709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9709_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 40 - 395
Target Start/End: Complemental strand, 25608334 - 25607970
Alignment:
| Q |
40 |
gttagttatttatttagtttgaaattannnnnnnnggaaaataataatcatcgtcgaaaaaggatattacatagcatacggattcaccccctcacctagt |
139 |
Q |
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| T |
25608334 |
gttagttatttatttagtttgaaattattttttttggaaaataataatcatcgtcgaaaaaggatattacatagcatacggattcaccccctcacctagt |
25608235 |
T |
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| Q |
140 |
tgtttattacgagcaacagttataaactctattcatgcaaaccaacataaaaaa--------tagacattaaaagttcacgagaaaccagctgtgaaata |
231 |
Q |
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| T |
25608234 |
tgtttattacgagcaccagttataaactctattcatgcaaaccaacataaaaaaataaaaaatagactttaaaagttcacgagaaaccagctgtgaaata |
25608135 |
T |
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| Q |
232 |
tatactagaaaatatgtgagttatttaacttccttctagtatgaactattaatgtgagaatgatgtgaaaaagaaga-aaaacacgtgagaatgatgaaa |
330 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
25608134 |
tatactagaaaatatgtgacttatttaacttccttctagtatgaactattaatgtgagaatgatgtgaaaaagaagaaaaaaaacgtgagaatgatgaaa |
25608035 |
T |
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| Q |
331 |
aagttgattttggacaagtttcttttatattttcaaaataaaaaatacactagtatattctcgac |
395 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
25608034 |
aagttgattttggacaagtttcttttatgttttcaaaataaaaaatacactagtatattttcgac |
25607970 |
T |
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