View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9709_high_2 (Length: 390)
Name: NF9709_high_2
Description: NF9709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9709_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 2466302 - 2466675
Alignment:
| Q |
8 |
acactaatgcaaacatttcttcatgaactgactcatttggttttgaagcaacctagttgcatcagattcaggatagaaaacgtgaaacacatgtttctct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2466302 |
acactaatgcaaacatttcttcatgaactgactcatttggttttgaagcaacctagttgcatcagattcaggataaaaaacgtgaaacacatgtttctct |
2466401 |
T |
|
| Q |
108 |
tcttcagcctcaacaacattcacctctttcacccctttcttcttcacaaactcagcatacataacacctctttccttcaaaaaatcctttccagcaacat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2466402 |
tcttcagcctcaacaacattcacctctttcacccctttcttcttcacaaactcagcatacataacacctctttccttcaaaaaatcctttccagcaacat |
2466501 |
T |
|
| Q |
208 |
aaacctcaacagcaggaaacttcaaccaaacactctcactcacatcatctttctcaaaattacaaccnnnnnnnttgcggtccgaatcttcaggcaaact |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
2466502 |
aaacctcaacagcaggaaacttcaaccaaacactctcactcacatcatctttctcaaaattacaaccaaaaaaatcgcggtccgaatcttcaggcaaact |
2466601 |
T |
|
| Q |
308 |
caatctccaaaacatatcattcattttcacatcctcaacacctccttctttctccatctctttctcagtccttt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2466602 |
caatctccaaaacatatcattcattttcacatcctcaacacctccttcttcctccatctctttctcagtccttt |
2466675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University