View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9709_low_1 (Length: 593)
Name: NF9709_low_1
Description: NF9709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9709_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 7 - 576
Target Start/End: Original strand, 24201286 - 24201855
Alignment:
| Q |
7 |
tttggtggttgtgatggcagtagcgacggttgtgaagaccgctgattgatttgaggttcggagtttacaggttgaaattgtagcggtggtactgatcgta |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24201286 |
tttggtggttgtgatggcagtagcgacggttgtgaagaccgctgattgattcgaggttctgagtttacaggttgaaattgtagcggtggtactgatcgta |
24201385 |
T |
|
| Q |
107 |
ctgatagtcgtgatggtgtaaaaaacggaagtggaggaggtggtggtggacaaagccggtcgatttcaggttccagatttcgcagtgatagtggtggacg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24201386 |
ctgatagtcgtgatggtgtaaaaaacggaagtggaggaggtggtggtggacaaagccagccgatttcaggttccagatttcgcggtgatagtggtggacg |
24201485 |
T |
|
| Q |
207 |
tggcggagaaggttgttgccaagtactagtttgagcttgagtacttggagatatgatcacagattctgtgtcagaatcatctgaactgtcaccacttgtg |
306 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24201486 |
tggtggagaaggttgttgccaagtactagtttgagcttgagtacttggagatatgatcacagattctgtgtcagaatcatctgaactgtcaccacttgtg |
24201585 |
T |
|
| Q |
307 |
ggaataaagcatagcttgtaccaccttgtggattgttggctatggccatggttcattggcatggctatagctacaagagtttgaggcttgaaaatatagc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24201586 |
ggaataaagcatagcttgtaccaccttgtggattgttggctatggccatggttcattggcatggctatagctacaagagtttgaggcttgaaaatatagc |
24201685 |
T |
|
| Q |
407 |
aataatgagtacaattcaatgtgtttatttttcataaagccttcaacttttgatcatataaaattttactcannnnnnnnggttccatttgctcctttgt |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
24201686 |
aataatgagtacaattcaatgtgtttatttttcataaagtcttcaacttttgatcatataaaattttactaattttttttggttccatttgctcctttgt |
24201785 |
T |
|
| Q |
507 |
gattaagcaatactcattttggttaaatgtgaaaaaagttgttgctgtcacatgcattacacgcactagc |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24201786 |
gattaagcaatactcattttggttaaatgtgaaaaaagttgttgctgtcacatgcattacacgcactagc |
24201855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University