View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9709_low_10 (Length: 277)
Name: NF9709_low_10
Description: NF9709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9709_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 18557664 - 18557413
Alignment:
| Q |
18 |
cttcctgaagttggtccagcaaaatcagaatgaggtccctcctcaaaggcccaatcatcaactcggttaatacccttgctgcttcgtggagaccaaatca |
117 |
Q |
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| T |
18557664 |
cttcctgaagttggtccagcaaaatcagaatgaggtccctcctcaaaggcccaatcatcaactcggttaatacccttgctgcttcgtggagaccaaatca |
18557565 |
T |
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| Q |
118 |
acccttctatcatcccactgaacttgtttatcttatctcccaagatcgatagctccctccatcctctttgaccacgcatcatctcatccactcttagaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18557564 |
acccttctatcatcccactgaacttgtttatcttatctcccaagatcgatagctccctccatcctctttgaccacgcatcatctcatccactcttagaaa |
18557465 |
T |
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| Q |
218 |
agcttgttgaagagatgttcctatatctccttcatgaccatcataaacacca |
269 |
Q |
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| T |
18557464 |
agcttgttgaagagatgttcctatatctccttcatgaccatcataaacacca |
18557413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 55 - 207
Target Start/End: Complemental strand, 48833802 - 48833650
Alignment:
| Q |
55 |
cctcctcaaaggcccaatcatcaactcggttaatacccttgctgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatcttatc |
154 |
Q |
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| T |
48833802 |
cctcctcaaaggcccaatcatcaactcggttaataccattgctgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatcttatc |
48833703 |
T |
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| Q |
155 |
tcccaagatcgatagctccctccatcctctttgaccacgcatcatctcatcca |
207 |
Q |
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| T |
48833702 |
tcccaagattgatagctccctccatcctctttgaccacgcatcatctcatcca |
48833650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 48834038 - 48833999
Alignment:
| Q |
18 |
cttcctgaagttggtccagcaaaatcagaatgaggtccct |
57 |
Q |
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| T |
48834038 |
cttcctgaagttggtccagcaaaatcagaatgaggtccct |
48833999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 48833135 - 48833098
Alignment:
| Q |
210 |
cttagaaaagcttgttgaagagatgttcctatatctcc |
247 |
Q |
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| T |
48833135 |
cttagaaaagcttgttgaagagaggttcctatatctcc |
48833098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 3079658 - 3079548
Alignment:
| Q |
97 |
tgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatcttatctcccaagatcgatagctccctccatcctctttgaccacgcat |
196 |
Q |
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|||||| |||||||| |||||| ||||| || || ||| ||||| |||| |||||| || |||| | || ||||||||||| |||||||||||||| |
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| T |
3079658 |
tgcttcttggagaccgaatcaatccttcaattattccattgaacccttttaccttatcacctaagactgctaattccctccatcccctttgaccacgcat |
3079559 |
T |
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| Q |
197 |
catctcatcca |
207 |
Q |
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| T |
3079558 |
catctcatcca |
3079548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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