View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9709_low_16 (Length: 247)
Name: NF9709_low_16
Description: NF9709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9709_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 23819825 - 23819600
Alignment:
| Q |
8 |
tggtggtgacatgacttttatcaaccgtggacaagtcctttgccaggccaaaattagaaagttttgcattataattctgtgatcaagtcaacaaggaaat |
107 |
Q |
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| T |
23819825 |
tggtggtgacatgacttttatcaaccgtggacaagtcctttgccaggccaaaattagaaagttttgcattataattctgtgatcaagtcaaaaaggaaat |
23819726 |
T |
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| Q |
108 |
tttcagatacaatgcataaataaacataatgtatttatgtgtgtgtacaaaaagacacatacggaatctagcaagacatttgaagtcttgaaatcacggt |
207 |
Q |
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| T |
23819725 |
tttcagatacaatgcataaataaacataatgtatttatgtgtgtgtacaaaaagacacatacggaatctagcaagacatttgaagtcttgaaatcacggt |
23819626 |
T |
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| Q |
208 |
acatcgcttttgtttgagcactgtga |
233 |
Q |
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| T |
23819625 |
acatcgcttttgtttgagcaccgtga |
23819600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 23832910 - 23832697
Alignment:
| Q |
16 |
acatgacttttatcaaccgtggacaagtcctttgccaggccaaaattagaaagttttgcattataattctgtgatcaagtcaacaaggaaattttcagat |
115 |
Q |
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| T |
23832910 |
acatgacttttatcaaccagggacaagttctttgccaggccaaaatttgaaagttttgcattataattctgtgatcaagtcaacaaggaaattttcagat |
23832811 |
T |
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| Q |
116 |
acaatgcataaataaacataatgtatttatgtgtgtgtacaaaaagacacatacggaatctagcaagacatttgaagtcttgaaatcacggtacatcgct |
215 |
Q |
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| T |
23832810 |
acaatacataaataaacgtaatatattca--tgtgtgtacaaaaag--acatacggaatctagcaagacatttgaagtctggaaatcgcggtacattgct |
23832715 |
T |
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| Q |
216 |
tttgtttgagcactgtga |
233 |
Q |
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| T |
23832714 |
tttgtttgagtactgtga |
23832697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 23829081 - 23828875
Alignment:
| Q |
8 |
tggtggtgacatgacttttatcaaccgtggacaagtcctttgccaggccaaaattagaaagttttgcattataattctgtgatcaagtcaacaaggaaat |
107 |
Q |
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|||||| ||||||||||||||||||| ||||| | |||||| | |||||||||||||||||||||||||||||||| |||||| || ||||||||| |
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| T |
23829081 |
tggtggagacatgacttttatcaaccatggacccgccctttgaatgcccaaaattagaaagttttgcattataattctgcgatcaaaccagcaaggaaat |
23828982 |
T |
|
| Q |
108 |
tttcagatacaatgcataaataaacataatgtatttatg------tgtgtgtacaaaaagacacatacggaatctagcaagacatttgaagtcttgaaat |
201 |
Q |
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| T |
23828981 |
tttcagatatgatacataaataaatataatatattaatgtgtttttgtgtgtagaaaaggacacatactgaatctagcaagacatttgaggtattgaaat |
23828882 |
T |
|
| Q |
202 |
cacggta |
208 |
Q |
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| T |
23828881 |
cgcggta |
23828875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 23825108 - 23824920
Alignment:
| Q |
43 |
tcctttgccaggccaaaattagaaagttttgcattataattctgtgatcaagtcaacaaggaaattttcagatacaatgcataaataaacataatgtatt |
142 |
Q |
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||||||||||| ||||||||| | ||||| ||||||||||||||| ||||| ||| | ||||| ||||| | | | | |||||||||||||| || | |
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| T |
23825108 |
tcctttgccagcccaaaattaaagagtttcgcattataattctgtcatcaaatcagc--ggaaactttcaaacatgttacttaaataaacataatttact |
23825011 |
T |
|
| Q |
143 |
tatgtgtgtgtacaaaaagacacatacggaatctagcaagacatttgaagtcttgaaatcacggtacatcgcttttgtttgagcactgtga |
233 |
Q |
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| T |
23825010 |
catgtggctgtacaaatggacacataccgaatccagcaagatatttgaagtcttcaaattttggtaaatcgattttgtttcggcactgtga |
23824920 |
T |
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