View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9709_low_2 (Length: 480)
Name: NF9709_low_2
Description: NF9709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9709_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 465
Target Start/End: Original strand, 37975371 - 37975826
Alignment:
| Q |
7 |
gaaacagagagagtcacaattgaaaaaacttaaccgacttcagctaaggctcttaaccaaccaagatataatttttgcacatattttcaaagctagatat |
106 |
Q |
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| T |
37975371 |
gaaacaaagagagtcacaattgaaaaaacttaaccgatttcagctaaggcttttaaccaaccaagatatgatttttgcacatattttcaaagctagatat |
37975470 |
T |
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| Q |
107 |
ttttacatagtctccatgcattacaggtggaaatataaaatttggggtgaacactagttgagatgtatgtacttaactctcatattactatcccaatacc |
206 |
Q |
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| T |
37975471 |
ttttacatagtctccatgcatcacaggtggaaatataaaatttggggtgaaccttagttgagatgtatggaa--aactctcatattactatcccaatacc |
37975568 |
T |
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| Q |
207 |
acaagagagtgagaatttccaattatctgatttgcttgattaagatacgcaaagttagacatggaatgttataaattgcttgctaaatgaaagggatgac |
306 |
Q |
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| T |
37975569 |
acaagagagtgagaatttccaattatccgatttgcttgattaagatacgcaaagttagacatggaatgttataaattgcttgctaaatgaaagggatgac |
37975668 |
T |
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| Q |
307 |
gaggaatttggcaatgttaaacaaactagctatgagaacgattgatacttgttcttgggatatgctaaggcgagacaagtatgagagatgacgggattgt |
406 |
Q |
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| T |
37975669 |
gaggaatttggcaatgttaaacaaactagctatgagaacgattgatacttgttcttgggatatgctaaggcgagacaagtatgagagatgacgggattgt |
37975768 |
T |
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| Q |
407 |
gggatggtttacaatatttgatccaaaatttcacaaatttatattttaatgttgttact |
465 |
Q |
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| T |
37975769 |
-ggatggtttacaatatttgatccaaaatttcacaaatttatattttaatgttgttact |
37975826 |
T |
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