View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9709_low_20 (Length: 240)
Name: NF9709_low_20
Description: NF9709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9709_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 53059934 - 53059711
Alignment:
| Q |
1 |
gtttgtcaatttaatttcctttttataaaaaatccctagatatagagatacattcataatnnnnnnnnntaaaattggttcatcaatctcctcgaaagaa |
100 |
Q |
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| T |
53059934 |
gtttgtcaatttaatttcctttttataaaaaatccctagatatagagatacattcataataaaaaaaa-tataattggttcatcaatctcctcgaaagaa |
53059836 |
T |
|
| Q |
101 |
aacataaatatcacattttataccttaatcagtatgtgatgcaaaagatgtgtccaacatagaaattgaattataagattttgtgatagtgatgacagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53059835 |
aacataaatatcacattttataccttaatcagtatgtgatgcaaaagatgtgtccaacatagaaattgaattataagattttgtgatagtgatgacagaa |
53059736 |
T |
|
| Q |
201 |
aaaataaagattggtattgaataat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
53059735 |
aaaataaagattggtattgaataat |
53059711 |
T |
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