View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9709_low_4 (Length: 434)
Name: NF9709_low_4
Description: NF9709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9709_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 216 - 423
Target Start/End: Complemental strand, 10224955 - 10224748
Alignment:
| Q |
216 |
tttaacatgtgtatgtacaacctacttagttagttcatgcttgaaaagttagaactgccacaagcaattcttagtttttcaagcagtggttcatgtggct |
315 |
Q |
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| T |
10224955 |
tttaacatgtgtatgtacaacctacttagttagttcatgcttgaaaagttagaactgccacaagcaattcttagtttttcaagcagtggttcatgtggct |
10224856 |
T |
|
| Q |
316 |
gcactccagccgccttcatctgatacacaaacttaacagcttcaatatacaaaccattttgtatgtaacccataagcatcgcattcaaactatcgacatt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10224855 |
gcactccagccgccttcatctgatacacaaacttaacagcttcaatatacaaaccattttgtatgtaacccataagcatcgcattcaaactatcgacatt |
10224756 |
T |
|
| Q |
416 |
tctttcat |
423 |
Q |
| |
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|||||||| |
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| T |
10224755 |
tctttcat |
10224748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 10225177 - 10224974
Alignment:
| Q |
18 |
ttttgaattaatatcctttaccatcaatgattttatcatgccatcaacannnnnnnnn-cctaaaatcagattcacattcatctgcacgtttactctata |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10225177 |
ttttgaattaatatcctttaccatcaatgattttatcatgccatcaacattttttttttcctaaaatcagattcacattcatctgcacgtttactctata |
10225078 |
T |
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| Q |
117 |
taatggaatttaaactagagttcttcataatacttttatatgcaattaacgactatcacaagtttgaaactgcaaagttatgtgtaaatttcagtatatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10225077 |
taatggaatttaaactagagttcttcataatacttttatatgcaattaaagactatcacaagtttgaaactgcaaagttatgtgtaaatttcagtatatt |
10224978 |
T |
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| Q |
217 |
ttaa |
220 |
Q |
| |
|
|||| |
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| T |
10224977 |
ttaa |
10224974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 10243856 - 10243730
Alignment:
| Q |
80 |
aaatcagattcacattcatctgcacgtttactctatataatggaatttaaactagagttcttcataatacttttatatgcaattaacgactatcacaagt |
179 |
Q |
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||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
10243856 |
aaatcagtttcacattcatctgcacgtttactctctagaatggaatttaaacaagagttcttcataatacttttatattcaattaaagactatcacaagt |
10243757 |
T |
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| Q |
180 |
ttgaaactgcaaagttatgtgtaaatt |
206 |
Q |
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|||||||| |||| |||||||||||| |
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| T |
10243756 |
ttgaaactacaaaagtatgtgtaaatt |
10243730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 216 - 313
Target Start/End: Complemental strand, 10243693 - 10243595
Alignment:
| Q |
216 |
tttaacatgtgtatgtacaacctacttagttagttcatgcttgaaaagttagaactgccac-aagcaattcttagtttttcaagcagtggttcatgtgg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||||| |||| ||||||||| |
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| T |
10243693 |
tttaacatgtgtatgtacaacctacttagttagttcatgattgaaaaggtagaactgccacaaagcaattcttaatttttcaagtagtgattcatgtgg |
10243595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 10233213 - 10233113
Alignment:
| Q |
216 |
tttaacatgtgtatgtacaacctac----ttagttagttcatgcttgaaaagttagaactgccacaagcaattcttagtttttcaagcagtggttcatgt |
311 |
Q |
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|||||||||||||| | |||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||| |||| ||||||| |
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| T |
10233213 |
tttaacatgtgtattttcaacctacgtacttagttagttcatggttgaaaaggtagaactaccacaagcaattcttaatttttcaagtagtgattcatgt |
10233114 |
T |
|
| Q |
312 |
g |
312 |
Q |
| |
|
| |
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|
| T |
10233113 |
g |
10233113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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