View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9709_low_8 (Length: 369)
Name: NF9709_low_8
Description: NF9709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9709_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 152 - 357
Target Start/End: Complemental strand, 5374850 - 5374645
Alignment:
| Q |
152 |
aaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaaaattgttgtttatttcaattgattaaaagcaacacataatagaa |
251 |
Q |
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| T |
5374850 |
aaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaaaattgttgtttatttcaattgattaaaagcaacacataatagaa |
5374751 |
T |
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| Q |
252 |
caaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaactgagaattgacggtga |
351 |
Q |
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| T |
5374750 |
caaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaactgagaattgacggtga |
5374651 |
T |
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| Q |
352 |
gaccta |
357 |
Q |
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| |||| |
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| T |
5374650 |
ggccta |
5374645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 151 - 313
Target Start/End: Complemental strand, 5393078 - 5392916
Alignment:
| Q |
151 |
aaaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaa-aattgttgtttatttcaattgattaaaagcaacacataatag |
249 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||| ||||||| |
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| T |
5393078 |
aaaagattttgctttatcaatttcattttgattatctactctcttcatatttttttagaattgttgtttatttcaattgattgaaagcaatgcataatat |
5392979 |
T |
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| Q |
250 |
aacaaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtct |
313 |
Q |
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| T |
5392978 |
aacaaaataaatatagaatttgaatgta-aaaatattgtgcacaagtatttgaataaaatgtct |
5392916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 5375492 - 5375341
Alignment:
| Q |
1 |
ctgtttacagatttatttcataaaagtccacatggatagcttatttaatatagccctctgggatatagttctttgtagcattccattagacaaaagccac |
100 |
Q |
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||||||||||||||||||||||| | || | |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| || ||| |
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| T |
5375492 |
ctgtttacagatttatttcataa--gccctctgggatagcttatttaatatagccgtctgggatatatttctttgtagcattccattagataaggtccat |
5375395 |
T |
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| Q |
101 |
accgtnnnnnnngaaaacataagaagtcagaaacaagaactgtgaattggaaaa |
154 |
Q |
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| T |
5375394 |
accttaaaaaaagaaaacataagaagtcagaaacaagaactgtgaattggaaaa |
5375341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 191
Target Start/End: Original strand, 5354617 - 5354656
Alignment:
| Q |
152 |
aaagattttgctttatcaatttcattttgactatctactc |
191 |
Q |
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| T |
5354617 |
aaagattttgctttatcaatttcattttgacaatctactc |
5354656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 5354681 - 5354735
Alignment:
| Q |
280 |
aaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaa |
334 |
Q |
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|||||||||||||||||||||||||| ||| |||||| |||| ||||| ||||| |
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| T |
5354681 |
aaatattgtgcacaagtatttgaatcgtatgcctttgttgaatataacctgaaaa |
5354735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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