View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9710_low_2 (Length: 459)
Name: NF9710_low_2
Description: NF9710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9710_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Complemental strand, 39238064 - 39237627
Alignment:
| Q |
17 |
ctgttcttgctaggatccttgcagagctaaaactgatcaacacagagttgggcagggttgctctttcatctgcactcattaatgatgttttgtcatgggt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39238064 |
ctgttcttgctaggatccttgcagagctaaaactgatcaacacagagttgggcagggttgctctttcatctgcactcattaatgatgttttgtcatgggt |
39237965 |
T |
|
| Q |
117 |
acttttggccatagcaattgctatggcagagaatgaaagagttactttggcttctataatggttgtgttgtcaagtgcagcatttgttgcttttaatgtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39237964 |
acttttggccatagcaattgctatggcagagaatgaaagagttactttggcttctataatggttgtgttgtcaagtgcagcatttgttgcttttaatgtt |
39237865 |
T |
|
| Q |
217 |
tttgttgtaagaccaataatcatgtggataataaggaaaacaccagaaggcgaaacgtttagcgatttctatatttgtttgatactagcaggtgtgatga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39237864 |
tttgttgtaagaccaataatcatgtggataataaggaaaacaccagaaggcgaaacgtttagcgatttctatatttgtttgatactagcaggtgtgatga |
39237765 |
T |
|
| Q |
317 |
tatctggtttcatcacagatgctattggaactcattctgtttttggagcttttgtgtttggtttgattattccaactggaccacttggttttgctcttat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39237764 |
tatctggtttcatcacagatgctattggaactcattctgtttttggagcttttgtgtttggtttgattattccaactggaccacttggttttgctcttat |
39237665 |
T |
|
| Q |
417 |
tgaaaagcttgaggactttgtttctggacctttgcttc |
454 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39237664 |
tgaaaagcttgaggactttgtttctggacttttgcttc |
39237627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 322 - 450
Target Start/End: Complemental strand, 44055887 - 44055759
Alignment:
| Q |
322 |
ggtttcatcacagatgctattggaactcattctgtttttggagcttttgtgtttggtttgattattccaactggaccacttggttttgctcttattgaaa |
421 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||||| | |||||| |||||| || |||| | |||| |
|
|
| T |
44055887 |
ggtttcatcactgatgctattggaactcattctgttttcggagcttttgtgttcggtttggcaattccgaatggaccgcttggtgtttctctggtagaaa |
44055788 |
T |
|
| Q |
422 |
agcttgaggactttgtttctggacctttg |
450 |
Q |
| |
|
|||||||||| |||||||| |||| |||| |
|
|
| T |
44055787 |
agcttgaggattttgtttcaggacttttg |
44055759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 44056192 - 44056105
Alignment:
| Q |
17 |
ctgttcttgctaggatccttgcagagctaaaactgatcaacacagagttgggcagggttgctctttcatctgcactcattaatgatgt |
104 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| ||||||||||| | || | | |||||||||| |||||||||| | |||||| |
|
|
| T |
44056192 |
ctgttctagctaggatcctcgccgagctaaaactcatcaacacagatataggaaagcttgctctttcggctgcactcatcagtgatgt |
44056105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 2811619 - 2811733
Alignment:
| Q |
326 |
tcatcacagatgctattggaactcattctgtttttggagcttttgtgtttggtttgattattccaactggaccacttggttttgctcttattgaaaagct |
425 |
Q |
| |
|
|||| ||||||| ||||||||| |||||| ||||||| |||||||| | ||| || | ||||||| |||||||||||| ||| | ||||||||||| |
|
|
| T |
2811619 |
tcattacagatgttattggaacacattctatttttggtgcttttgtttatggattagtgattccaaatggaccacttggagctgcaataattgaaaagct |
2811718 |
T |
|
| Q |
426 |
tgaggactttgtttc |
440 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
2811719 |
agaagactttgtttc |
2811733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University