View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9710_low_3 (Length: 434)

Name: NF9710_low_3
Description: NF9710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9710_low_3
NF9710_low_3
[»] chr6 (2 HSPs)
chr6 (11-419)||(2326615-2327023)
chr6 (18-338)||(14266694-14267014)
[»] chr5 (5 HSPs)
chr5 (15-352)||(25832562-25832899)
chr5 (15-336)||(31159750-31160071)
chr5 (16-316)||(41318315-41318621)
chr5 (15-336)||(31198940-31199261)
chr5 (235-345)||(41351645-41351755)
[»] chr3 (1 HSPs)
chr3 (15-342)||(25792468-25792795)
[»] chr4 (3 HSPs)
chr4 (204-352)||(17180721-17180869)
chr4 (15-76)||(31603302-31603363)
chr4 (15-53)||(17180532-17180570)
[»] chr7 (1 HSPs)
chr7 (152-306)||(17827964-17828118)
[»] chr1 (1 HSPs)
chr1 (235-297)||(25540546-25540608)


Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 2326615 - 2327023
Alignment:
Q  11 cacagatgttgaggggatgttaagcttgtatgaagcctcacatatgatggttcatggagaggagatcttggaaaaggcattggcttttacttcaactcac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2326615 cacagatgttgaggggatgttaagcttgtatgaagcctcacatatgatggttcatggagaggagatcttggaaaaggcattggcttttacttcaactcac 2326714  T
Q  111 ctcgagttcattgttacccaattgagtccttttcttgcagcacaagtcaaacatagcttaaagcaggctctccataggaacttccataggctagaggcac 210  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2326715 ctcgagtccattgttacccaattgagtccttttcttgcagcacaagtcaaacatagcttaaagcaggctctccataggaacttccataggctagaggcac 2326814  T
Q  211 gaaggtacatttcaatctatgagaaagatccttcacacaatgaaactctactcactttggcaaaattggatttcaatattctccaaagtcttcatcgaaa 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2326815 gaaggtacatttcaatctatgagaaagatccttcacacaatgaaactctactcactttggcaaaattggatttcaatattctccaatgtcttcatcgaaa 2326914  T
Q  311 ggaattcggaaaactttgcaagtaagtacttcaataacacacgatcaaaatcctttgaaacgaaacaatattaacaggaatattacttacaaaattaatc 410  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2326915 ggaattcggaaaaatttgcaagtaagtacttcaataacacacgatcaaaatcctttgaaacgaaacaatattaacaggaatattacttacaaaattaatc 2327014  T
Q  411 tggttatat 419  Q
    || ||||||    
T  2327015 tgtttatat 2327023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 14267014 - 14266694
Alignment:
Q  18 gttgaggggatgttaagcttgtatgaagcctcacatatgatggttcatggagaggagatcttggaaaaggcattggcttttacttcaactcacctcgagt 117  Q
    ||||| |||||| |||||||||||||||| ||||||||||| ||||||| ||| || || |||||| |||||||||  |||||||| |||||||| ||||    
T  14267014 gttgaagggatgctaagcttgtatgaagcttcacatatgatcgttcatgaagaagacattttggaagaggcattggggtttacttccactcacctggagt 14266915  T
Q  118 tcattgttacccaattgagtccttttcttgcagcacaagtcaaacatagctt-aaagcaggctctccataggaacttccataggctagaggcacgaaggt 216  Q
     ||||| ||| ||||| |  | || |||||||| ||| |||||| || |||| ||||||  || | || | ||| || | ||||||||||||||||   |    
T  14266914 ccattgctactcaattaaaccattctcttgcagaacaggtcaaatat-gcttcaaagcatcctatacacaagaatttgcctaggctagaggcacgacatt 14266816  T
Q  217 acatttcaatctatgagaaagatccttcacacaatgaaactctactcactttggcaaaattggatttcaatattctccaaagtcttcatcgaaaggaatt 316  Q
    ||||||| ||||| ||| ||||||| || || ||||||| ||||||||||||  | ||||| ||||| ||| | |||||||| || |||| ||| |||||    
T  14266815 acatttctatctacgagcaagatccatcccataatgaaattctactcactttctcgaaattagattttaatttgctccaaagcctacatcaaaaagaatt 14266716  T
Q  317 cggaaaactttgcaagtaagta 338  Q
     || ||  ||||||||||||||    
T  14266715 tggtaacatttgcaagtaagta 14266694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 8e-68; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 15 - 352
Target Start/End: Original strand, 25832562 - 25832899
Alignment:
Q  15 gatgttgaggggatgttaagcttgtatgaagcctcacatatgatggttcatggagaggagatcttggaaaaggcattggcttttacttcaactcacctcg 114  Q
    ||||| || |||||||||||||||||||| ||||||||||||||  ||||||||||||| || |||||| |||||||||| ||||| || |||||||| |    
T  25832562 gatgtcgaagggatgttaagcttgtatgaggcctcacatatgattattcatggagaggaaattttggaagaggcattggcatttacatccactcaccttg 25832661  T
Q  115 agttcattgttacccaattgagtccttttcttgcagcacaagtcaaacatagcttaaag-caggctctccataggaacttccataggctagaggcacgaa 213  Q
    ||| |||||  |||||| ||||||  ||||||||||||||||||||| || |||| ||| ||||||||||| | |||||| |  |||||||||||||||     
T  25832662 agtccattgccacccaaatgagtcactttcttgcagcacaagtcaaatat-gctttaagacaggctctccacaagaacttgccaaggctagaggcacgac 25832760  T
Q  214 ggtacatttcaatctatgagaaagatccttcacacaatgaaactctactcactttggcaaaattggatttcaatattctccaaagtcttcatcgaaagga 313  Q
    |||||||||| || |||||| || ||||||| ||  |||||| ||||||||||||||| ||||| ||||| ||| | |||||||| || |||| ||| ||    
T  25832761 ggtacatttctatttatgagcaaaatccttcgcatgatgaaattctactcactttggcgaaattagattttaatttgctccaaagcctacatcaaaaaga 25832860  T
Q  314 attcggaaaactttgcaagtaagtacttcaataacacac 352  Q
     || |||||  ||||||||||||||||||||| ||||||    
T  25832861 gtttggaaacatttgcaagtaagtacttcaatcacacac 25832899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 31159750 - 31160071
Alignment:
Q  15 gatgttgaggggatgttaagcttgtatgaagcctcacatatgatggttcatggagaggagatcttggaaaaggcattggcttttacttcaactcacctcg 114  Q
    ||||||||||||||||||||||||||||||||  ||||| | |||||||| |||||||| || || ||| | || |||||||| ||| | |||||||| |    
T  31159750 gatgttgaggggatgttaagcttgtatgaagctacacatctcatggttcaaggagaggatattttagaagatgccttggctttcactaccactcacctgg 31159849  T
Q  115 agttcattgttacccaattgagtccttttcttgcagcacaagtcaaacatagcttaaagcaggctctccataggaacttccataggctagaggcacgaag 214  Q
    | ||  |||  | | ||| ||| | |  ||  | | |||||||||||||  |||||| ||| |||||||| | |||||| | ||||||||||||||||||    
T  31159850 actttgttgccaacgaatcgagccatcctcgcgtaacacaagtcaaacactgcttaaggcaagctctccacaagaacttgcctaggctagaggcacgaag 31159949  T
Q  215 gtacatttcaatctatgagaaagatccttcacacaatgaaactctactcactttggcaaaattggatttcaatattctccaaagtcttcatcgaaaggaa 314  Q
     |||||||  || || ||| | |||||||| ||  ||||||   |||| | |||||| ||| | ||||||||||| ||||||||| | |||| |||||||    
T  31159950 ctacattttcatatacgaggaggatccttcgcatgatgaaaacttacttattttggcgaaactagatttcaatatgctccaaagtatacatcaaaaggaa 31160049  T
Q  315 ttcggaaaactttgcaagtaag 336  Q
    ||||| || |||| ||||||||    
T  31160050 ttcggcaacctttacaagtaag 31160071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 41318621 - 41318315
Alignment:
Q  16 atgttgaggggatgttaagcttgtatgaagcctcacatatgatggttcatggagaggagatcttggaaaaggcattggcttttacttcaactcacctcga 115  Q
    ||||||||||||| |||||||| ||||||||| ||||| | ||||||||||||||||| || |||||| |||| |||| ||| ||| | |||||||| ||    
T  41318621 atgttgaggggattttaagcttttatgaagccacacatgtcatggttcatggagaggacattttggaagaggccttggttttcactaccactcaccttga 41318522  T
Q  116 gttcattgttacccaattgag---tccttttcttgcagca---caagtcaaacatagcttaaagcaggctctccataggaacttccataggctagaggca 209  Q
    ||  |||   |  |||||||    ||||  || |  ||||   |||||||||||| |||||| |||| | |||||||  ||||| | |||| | ||||||    
T  41318521 gtctattaccaagcaattgaaccatcctcatcctcaagcattacaagtcaaacattgcttaaggcagaccctccataaaaacttgcctaggttggaggca 41318422  T
Q  210 cgaaggtacatttcaatctatgagaaagatccttcacacaatgaaactctactcactttggcaaaattggatttcaatattctccaaagtcttcatcgaa 309  Q
    ||||  |||||||| || |||||| ||||||||||||| ||  ||| | |||||| |||||||||| | ||||||||||| ||||||||| | |||| ||    
T  41318421 cgaaactacatttctatatatgagcaagatccttcacataacaaaaatttactcattttggcaaaactagatttcaatatgctccaaagtttacatcaaa 41318322  T
Q  310 aggaatt 316  Q
    |||||||    
T  41318321 aggaatt 41318315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 31198940 - 31199261
Alignment:
Q  15 gatgttgaggggatgttaagcttgtatgaagcctcacatatgatggttcatggagaggagatcttggaaaaggcattggcttttacttcaactcacctcg 114  Q
    |||||||||||| |||||||||||||||||||| ||||  | ||||||||||||||||| || |||||| |||| |||||||| ||| | ||||||||      
T  31198940 gatgttgaggggctgttaagcttgtatgaagccacacaactcatggttcatggagaggacattttggaagaggctttggctttcactaccactcaccttc 31199039  T
Q  115 agttcattgttacccaattgagtccttttcttgcagcacaagtcaaacatagcttaaagcaggctctccataggaacttccataggctagaggcacgaag 214  Q
    | | ||| |  |  ||||||||   || || ||||  |||||| ||| |||||||||  || |||||| ||| |||||| | | |||| |||||  |||     
T  31199040 aatccatcgccaatcaattgagcaattctcatgcaatacaagtaaaaaatagcttaagacaagctctctataagaacttgcctcggctcgaggccagaaa 31199139  T
Q  215 gtacatttcaatctatgagaaagatccttcacacaatgaaactctactcactttggcaaaattggatttcaatattctccaaagtcttcatcgaaaggaa 314  Q
     |||||||  || |||||| |||||||||| ||  || ||| | |||||  |||||| ||| | ||||||||||| ||||||||  | ||||  ||||||    
T  31199140 ctacattttcatatatgagcaagatccttcccatgataaaaatttactccttttggcgaaactagatttcaatatgctccaaagattgcatcagaaggaa 31199239  T
Q  315 ttcggaaaactttgcaagtaag 336  Q
    || || ||| ||||||||||||    
T  31199240 tttggtaaagtttgcaagtaag 31199261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 345
Target Start/End: Complemental strand, 41351755 - 41351645
Alignment:
Q  235 aagatccttcacacaatgaaactctactcactttggcaaaattggatttcaatattctccaaagtcttcatcgaaaggaattcggaaaactttgcaagta 334  Q
    |||||||||| || ||||||| | |||||  |||||||||||| ||||||||||| || |||||  | ||||| |||||||| |||||  ||||||||||    
T  41351755 aagatccttcccataatgaaattttactccttttggcaaaattagatttcaatatgcttcaaagcttgcatcggaaggaatttggaaacttttgcaagta 41351656  T
Q  335 agtacttcaat 345  Q
    |||||||||||    
T  41351655 agtacttcaat 41351645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 15 - 342
Target Start/End: Original strand, 25792468 - 25792795
Alignment:
Q  15 gatgttgaggggatgttaagcttgtatgaagcctcacatatgatggttcatggagaggagatcttggaaaaggcattggcttttacttcaactcacctcg 114  Q
    |||||||||| ||||||| |||||||||||||| ||||| | ||| |||| |||||||  || |||||| |||| |||||||| ||| | |||||||| |    
T  25792468 gatgttgaggagatgttatgcttgtatgaagccacacatgtcatgattcacggagagggtattttggaagaggccttggctttcactaccactcaccttg 25792567  T
Q  115 agttcattgttacccaattgagtccttttcttgcagcacaagtcaaacatagcttaaagcaggctctccataggaacttccataggctagaggcacgaag 214  Q
    ||| |||||  |  |||||||||| |   | ||||| |||||||||||||||||||| ||| |||||||| | ||| || | |||| ||||||||||| |    
T  25792568 agtccattgccaagcaattgagtcatccgcgtgcagtacaagtcaaacatagcttaaggcaagctctccacaagaatttgcctaggttagaggcacgacg 25792667  T
Q  215 gtacatttcaatctatgagaaagatccttcacacaatgaaactctactcactttggcaaaattggatttcaatattctccaaagtcttcatcgaaaggaa 314  Q
     |||||||| || || |||  ||||||||| |   |||||| | |||||| ||| || |||||||||||||| || |||||||  || |||| |||||||    
T  25792668 ctacatttccatatacgagctagatccttcgcgtgatgaaaatttactcattttagctaaattggatttcaacatactccaaaccctacatcaaaaggaa 25792767  T
Q  315 ttcggaaaactttgcaagtaagtacttc 342  Q
    || || || ||||||||||||| |||||    
T  25792768 tttggtaacctttgcaagtaaggacttc 25792795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 352
Target Start/End: Original strand, 17180721 - 17180869
Alignment:
Q  204 gaggcacgaaggtacatttcaatctatgagaaagatccttcacacaatgaaactctactcactttggcaaaattggatttcaatattctccaaagtcttc 303  Q
    ||||||||| | |||||||| || || ||| |||||||||| || |||||||  |||||| ||||||||||||| ||||| ||||| |||||||  || |    
T  17180721 gaggcacgacgctacatttctatttacgagcaagatccttcccataatgaaatactactctctttggcaaaattagattttaatatgctccaaaagctac 17180820  T
Q  304 atcgaaaggaattcggaaaactttgcaagtaagtacttcaataacacac 352  Q
    ||| ||| |||||||| ||  |||||||||||| |||||||| ||||||    
T  17180821 atcaaaaagaattcggtaatatttgcaagtaagcacttcaattacacac 17180869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 31603302 - 31603363
Alignment:
Q  15 gatgttgaggggatgttaagcttgtatgaagcctcacatatgatggttcatggagaggagat 76  Q
    ||||||||||||||| |||| |||||||||||| ||||||||| | ||||||||||||||||    
T  31603302 gatgttgaggggatgctaagtttgtatgaagccacacatatgaggattcatggagaggagat 31603363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 17180532 - 17180570
Alignment:
Q  15 gatgttgaggggatgttaagcttgtatgaagcctcacat 53  Q
    |||||||| || |||||||||||||||||||||||||||    
T  17180532 gatgttgaaggaatgttaagcttgtatgaagcctcacat 17180570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 306
Target Start/End: Complemental strand, 17828118 - 17827964
Alignment:
Q  152 acaagtcaaacatagcttaaagcaggctctccataggaacttccataggctagaggcacgaaggtacatttcaatctatgagaaagatccttcacacaat 251  Q
    ||||| ||||||| |||||| |||| | |||||||  ||| |||  ||| | ||||||| ||| |||||||| |  || ||| |||||||||| || |||    
T  17828118 acaagccaaacattgcttaaggcagaccctccataaaaacatccccaggttggaggcaccaagctacatttctagatacgagcaagatccttcgcataat 17828019  T
Q  252 gaaactctactcactttggcaaaattggatttcaatattctccaaagtcttcatc 306  Q
    |||| | |||||| ||| ||| || | ||||||||||| ||||||||||| ||||    
T  17828018 gaaaatttactcattttagcacaactagatttcaatatgctccaaagtctacatc 17827964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 25540608 - 25540546
Alignment:
Q  235 aagatccttcacacaatgaaactctactcactttggcaaaattggatttcaatattctccaaa 297  Q
    |||||||||| || | ||||| |||||||||||||||||| || ||||| ||||| |||||||    
T  25540608 aagatccttcccatagtgaaattctactcactttggcaaagttagattttaatatgctccaaa 25540546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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