View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9710_low_5 (Length: 349)

Name: NF9710_low_5
Description: NF9710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9710_low_5
NF9710_low_5
[»] chr4 (3 HSPs)
chr4 (1-346)||(23596215-23596560)
chr4 (1-346)||(23587363-23587708)
chr4 (35-184)||(54396650-54396799)
[»] chr7 (4 HSPs)
chr7 (29-346)||(8017043-8017360)
chr7 (36-264)||(39985874-39986102)
chr7 (12-187)||(8102871-8103046)
chr7 (40-184)||(10494166-10494310)
[»] chr2 (6 HSPs)
chr2 (45-268)||(17716401-17716624)
chr2 (45-268)||(17717662-17717885)
chr2 (40-186)||(12234921-12235067)
chr2 (45-136)||(17666529-17666620)
chr2 (50-100)||(5445627-5445677)
chr2 (40-184)||(16657309-16657453)
[»] chr1 (1 HSPs)
chr1 (40-184)||(4678350-4678494)
[»] chr6 (1 HSPs)
chr6 (38-217)||(11133224-11133403)
[»] chr8 (1 HSPs)
chr8 (51-127)||(42324553-42324629)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 23596560 - 23596215
Alignment:
Q  1 cgaaaataagaacgttcttctcaccggtacttgtagctttcttatcaagaccataagcaatagcggcagcagtaggctcgttaataattctcatcacatt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23596560 cgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacatt 23596461  T
Q  101 gagtccagaaatgacaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaagg 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23596460 gagtccagaaatgacaccagcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaagg 23596361  T
Q  201 taagcctctgcgatctccttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatcattg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23596360 taagcctctgcgatctccttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatcattg 23596261  T
Q  301 gtttgtcagcagggccaggaatgaccttgaacggccacaatttcat 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23596260 gtttgtcagcagggccaggaatgaccttgaacggccacaatttcat 23596215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 23587708 - 23587363
Alignment:
Q  1 cgaaaataagaacgttcttctcaccggtacttgtagctttcttatcaagaccataagcaatagcggcagcagtaggctcgttaataattctcatcacatt 100  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||| ||||||    
T  23587708 cgaaaataagaacgttcttctcacccgtgcttgtagctttcttatcaagaccataagcaatagcagcagcggtaggttcattaataattctcaacacatt 23587609  T
Q  101 gagtccagaaatgacaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaagg 200  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||     
T  23587608 gagtccagaaatgacaccggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattcttaatcgttgtaccaaga 23587509  T
Q  201 taagcctctgcgatctccttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatcattg 300  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||||    
T  23587508 taagcctctgcaatctccttcattttcataagaaccatagaagatatctcttcagcggaaaattgcttctcttccgctttgtagttcaccacgatcattg 23587409  T
Q  301 gtttgtcagcagggccaggaatgaccttgaacggccacaatttcat 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23587408 gtttgtcagcagggccaggaatgaccttgaacggccacaatttcat 23587363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 35 - 184
Target Start/End: Original strand, 54396650 - 54396799
Alignment:
Q  35 agctttcttatcaagaccataagcaatagcggcagcagtaggctcgttaataattctcatcacattgagtccagaaatgacaccggcatccttagtagct 134  Q
    |||||||||||| | |||||||||||| || |||||||||||||| |||||||| |||| |||||| |  || |||||  |||| ||||| || ||||||    
T  54396650 agctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagct 54396749  T
Q  135 tgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattctt 184  Q
    |||||||| ||||| ||||| || ||||| || || ||||| ||||||||    
T  54396750 tgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 54396799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 29 - 346
Target Start/End: Complemental strand, 8017360 - 8017043
Alignment:
Q  29 acttgtagctttcttatcaagaccataagcaatagcggcagcagtaggctcgttaataattctcatcacattgagtccagaaatgacaccggcatcctta 128  Q
    ||||||||| || || ||||| || || |||||||| ||||| || |||||||| ||||||||||  ||||||||||| | ||||||||||||||||||     
T  8017360 acttgtagcctttttgtcaagtccgtacgcaatagctgcagctgttggctcgttgataattctcaaaacattgagtcctgcaatgacaccggcatccttt 8017261  T
Q  129 gtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaaggtaagcctctgcgatctccttcatcttca 228  Q
    || |||||||| || ||||| |||||||| || || || || |||||||||||||| |  |||| ||| |||||||| || || |||||   |||||| |    
T  8017260 gtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcacagttgaaccgaggtaagcttcagcaatctcacgcatcttta 8017161  T
Q  229 taagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatcattggtttgtcagcagggccaggaatgacctt 328  Q
    | || ||||| || || || || ||||||| ||||||||| |||||  |||||||||| ||  | |||||||| || ||| |||| |||| ||| |||||    
T  8017160 tgagtaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttgtagttaacaccaatcattggcttttcaccaggaccagcaataacctt 8017061  T
Q  329 gaacggccacaatttcat 346  Q
     || |||||||| |||||    
T  8017060 aaaaggccacaacttcat 8017043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 264
Target Start/End: Original strand, 39985874 - 39986102
Alignment:
Q  36 gctttcttatcaagaccataagcaatagcggcagcagtaggctcgttaataattctcatcacattgagtccagaaatgacaccggcatccttagtagctt 135  Q
    |||||||| ||||||||||||||||| || |||||||| ||||| || ||||||| ||| ||||| || || | ||| || || |||||||| |||||||    
T  39985874 gctttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagctt 39985973  T
Q  136 gacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaaggtaagcctctgcgatctccttcatcttcataagaac 235  Q
    |||| || || || || ||||| ||||| || || ||||| ||||||||||| |  | ||||||||| || || || |||||   ||||||||| || ||    
T  39985974 gacgctgggagtcattaaagtaagcagggacagtaacaacagcattcttaatggcagaaccaaggtacgcttcggcaatctcacgcatcttcattagcac 39986073  T
Q  236 catggaagatatctcttcagcagaaaatt 264  Q
    ||||||||| |||||||| |||| |||||    
T  39986074 catggaagagatctcttcggcagcaaatt 39986102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 8102871 - 8103046
Alignment:
Q  12 acgttcttctcaccggtacttgtagctttcttatcaagaccataagcaatagcggcagcagtaggctcgttaataattctcatcacattgagtccagaaa 111  Q
    ||||||||||||||   |||||| || || || |||||||| || |||||||| |||||||| ||||| |||||||||||||  ||||| |  ||||  |    
T  8102871 acgttcttctcaccaacacttgtcgcctttttgtcaagaccgtaggcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcga 8102970  T
Q  112 tgacaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaat 187  Q
    | ||||| ||||| ||||| |||||||| || ||||| |||||||| ||||| || || || ||||||||||||||    
T  8102971 taacaccagcatctttagttgcttgacgctgagaatcattgaagtaagcagggacagtgacgacggcattcttaat 8103046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 184
Target Start/End: Complemental strand, 10494310 - 10494166
Alignment:
Q  40 tcttatcaagaccataagcaatagcggcagcagtaggctcgttaataattctcatcacattgagtccagaaatgacaccggcatccttagtagcttgacg 139  Q
    |||| ||||| ||||| |||||||| ||||||||||| || || || || |  || ||||| || |||| |||  |||| |||||  ||||||| |  ||    
T  10494310 tcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatcaatagtagcctttcg 10494211  T
Q  140 ttgtgaatcgttgaagtatgcaggcacggttacaacggcattctt 184  Q
    ||| |||||||||||||| || ||||| || ||||| ||||||||    
T  10494210 ttgagaatcgttgaagtaagccggcacagtaacaacagcattctt 10494166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 268
Target Start/End: Complemental strand, 17716624 - 17716401
Alignment:
Q  45 tcaagaccataagcaatagcggcagcagtaggctcgttaataattctcatcacattgagtccagaaatgacaccggcatccttagtagcttgacgttgtg 144  Q
    |||| |||||||||||| || |||||||| ||||| |||||||||||||| | ||| || |||| |||  |||| |||| |||||||||||| |  || |    
T  17716624 tcaaaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgag 17716525  T
Q  145 aatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaaggtaagcctctgcgatctccttcatcttcataagaaccatggaaga 244  Q
    ||   || ||||| ||||| || || ||||||||||||||||| |  |  |||||||| ||||| || | |||   ||||||| | || |||||||||||    
T  17716524 aaaaattaaagtaagcagggacagtaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaaga 17716425  T
Q  245 tatctcttcagcagaaaattgctt 268  Q
     |||||||| || | |||||||||    
T  17716424 gatctcttctgcggcaaattgctt 17716401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 268
Target Start/End: Complemental strand, 17717885 - 17717662
Alignment:
Q  45 tcaagaccataagcaatagcggcagcagtaggctcgttaataattctcatcacattgagtccagaaatgacaccggcatccttagtagcttgacgttgtg 144  Q
    |||| |||||||||||| || |||||||| ||||| |  ||||||  ||| ||||| || |||| ||  | | |||||||||||||| ||||    || |    
T  17717885 tcaaaaccataagcaatggctgcagcagtgggctcatcgataatttccatgacattaagaccagcaaaaagagcggcatccttagtaacttgtatctgag 17717786  T
Q  145 aatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaaggtaagcctctgcgatctccttcatcttcataagaaccatggaaga 244  Q
    |||| || ||||| ||||| || || |||||||||||| |||| || | ||||| ||| |||||||| |||||   |||||||   || |||||||||||    
T  17717785 aatcattaaagtaagcagggacagtaacaacggcattcctaatggtagaaccaaagtaggcctctgcaatctcacgcatcttccagagtaccatggaaga 17717686  T
Q  245 tatctcttcagcagaaaattgctt 268  Q
     |||||||| |||| |||||||||    
T  17717685 gatctcttctgcagcaaattgctt 17717662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 12234921 - 12235067
Alignment:
Q  40 tcttatcaagaccataagcaatagcggcagcagtaggctcgttaataattctcatcacattgagtccagaaatgacaccggcatccttagtagcttgacg 139  Q
    |||| ||||||||||| |||| |||||| ||  | || ||||| || |  ||||| |||||||| |||| ||||||||| |||||  |||| ||||  ||    
T  12234921 tcttgtcaagaccatatgcaacagcggctgccatgggttcgttcattaccctcataacattgaggccagcaatgacaccagcatctatagttgcttttcg 12235020  T
Q  140 ttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaa 186  Q
    ||| ||||| ||||| || ||||||||||| ||||| ||||||||||    
T  12235021 ttgagaatcattgaaataagcaggcacggtaacaactgcattcttaa 12235067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 17666620 - 17666529
Alignment:
Q  45 tcaagaccataagcaatagcggcagcagtaggctcgttaataattctcatcacattgagtccagaaatgacaccggcatccttagtagcttg 136  Q
    |||| |||||||||||| || |||| ||| ||||| || ||||||| ||  ||||| || |||||||| | |||||||||||||||||||||    
T  17666620 tcaaaaccataagcaatggctgcaggagtgggctcattgataattcccaggacattaagaccagaaataagaccggcatccttagtagcttg 17666529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 5445677 - 5445627
Alignment:
Q  50 accataagcaatagcggcagcagtaggctcgttaataattctcatcacatt 100  Q
    ||||||||||||||| || |||||||||||||| || || |||||||||||    
T  5445677 accataagcaatagcagctgcagtaggctcgttgatgatcctcatcacatt 5445627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 184
Target Start/End: Complemental strand, 16657453 - 16657309
Alignment:
Q  40 tcttatcaagaccataagcaatagcggcagcagtaggctcgttaataattctcatcacattgagtccagaaatgacaccggcatccttagtagcttgacg 139  Q
    |||| ||||||||||| |||||||| ||||||||||| || || |||||||  || ||||| || ||||  ||| |||| |||||  | || ||||  ||    
T  16657453 tcttgtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatctatggtggcttttcg 16657354  T
Q  140 ttgtgaatcgttgaagtatgcaggcacggttacaacggcattctt 184  Q
     || ||||| |||||||| || ||||| || ||||| ||||||||    
T  16657353 ctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 16657309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 184
Target Start/End: Complemental strand, 4678494 - 4678350
Alignment:
Q  40 tcttatcaagaccataagcaatagcggcagcagtaggctcgttaataattctcatcacattgagtccagaaatgacaccggcatccttagtagcttgacg 139  Q
    |||| |||| |||||| |||||||| ||| ||||||| ||||| || |||   || ||||| ||||||| |||| |||| |||||  | |||||||  ||    
T  4678494 tcttgtcaaaaccatatgcaatagctgcaacagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcg 4678395  T
Q  140 ttgtgaatcgttgaagtatgcaggcacggttacaacggcattctt 184  Q
    ||| ||||| ||||||||||||||||| || |||||| |||||||    
T  4678394 ttgagaatcattgaagtatgcaggcacagtaacaacgacattctt 4678350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 217
Target Start/End: Original strand, 11133224 - 11133403
Alignment:
Q  38 tttcttatcaagaccataagcaatagcggcagcagtaggctcgttaataattctcatcacattgagtccagaaatgacaccggcatccttagtagcttga 137  Q
    |||||| ||||||||||| ||||| || || || ||||||||||| || |||| ||| || ||||| || | ||| ||||| |||||  ||||||||||     
T  11133224 tttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacctgcatctctagtagcttgg 11133323  T
Q  138 cgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaaggtaagcctctgcgatctc 217  Q
    ||||| || || || ||||| ||||| || |||| |||| ||| ||| | |||||  ||||||||| | ||||| |||||    
T  11133324 cgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatctc 11133403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 42324629 - 42324553
Alignment:
Q  51 ccataagcaatagcggcagcagtaggctcgttaataattctcatcacattgagtccagaaatgacaccggcatcctt 127  Q
    ||||||||||| || ||||| ||||| |||||||| |||||   |||||| |  |||| ||||||||||||||||||    
T  42324629 ccataagcaatggcagcagcggtaggttcgttaatgattctagccacattcaaaccagcaatgacaccggcatcctt 42324553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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