View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9710_low_6 (Length: 282)
Name: NF9710_low_6
Description: NF9710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9710_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 1718079 - 1717815
Alignment:
| Q |
1 |
tgattgtggatttgcatgcagttgaaggttctcaaaatggtcttgagcatagtgggacaagagatggatatacagaatggggttattcatacattcctca |
100 |
Q |
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| T |
1718079 |
tgattgtggatttgcatgcagttgaaggttctcaaaatggttttgagcatagtgggacaagagatggatatacagaatggggttattcatacattcctca |
1717980 |
T |
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| Q |
101 |
gacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaaaatttattcatatattcctgaaacagaatgttaagaacactctctt |
200 |
Q |
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| T |
1717979 |
gacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaaaatttattcatatattcctcaggcagaatgttaagaacactctctt |
1717880 |
T |
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| Q |
201 |
actaacacnnnnnnnaacatttaccctcgtattagatgaaatccatataaatctcaccactttat |
265 |
Q |
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| T |
1717879 |
actaatactttttctaacactcactctcgtattagatgaaatctatatggatctcaccactttat |
1717815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 1739549 - 1739395
Alignment:
| Q |
1 |
tgattgtggatttgcatgcagttgaaggttctcaaaatggtcttgagcatagtgggacaagagatggatatacagaatggggttattcatacattcctca |
100 |
Q |
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| T |
1739549 |
tgattgtggacttgcatgccattgaaggttctcaaaatggttttgagcatagtgggacaagagatggatatacagaatgggatgattcatacattccaca |
1739450 |
T |
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| Q |
101 |
gacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaaa |
155 |
Q |
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| T |
1739449 |
gacagtctctgtcatagagttcttagcaaaaaggttatgtatctatatatctaaa |
1739395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 1755013 - 1754877
Alignment:
| Q |
1 |
tgattgtggatttgcatgcagttgaaggttctcaaaatggtcttgagcatagtgggacaagagatggatatacagaatggggttattcatacattcctca |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||| || ||||| ||||||||||||| || |||||||||| | |||||||| ||||| |
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| T |
1755013 |
tgattgtggacttgcatgcagttgaaggttctcaaaatggtaatgatcacagtggaacaagagatggatttatagaatggggtgaatcatacatacctca |
1754914 |
T |
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| Q |
101 |
gacagtctctgtcatagaattcttagcaaaaaggttt |
137 |
Q |
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| T |
1754913 |
gacagtctctgtcatagatttcctagcaaaaaggttt |
1754877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 1749398 - 1749254
Alignment:
| Q |
1 |
tgattgtggatttgcatgcagttgaaggttctcaaaatggtcttgagcatagtgggacaagagatggatatacagaatggggttattcatacattcctca |
100 |
Q |
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||||||| ||||||||||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| |||| ||||| ||||| |
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| T |
1749398 |
tgattgtagatttgcatgctgttgaaggttctcaaaatggcaatgaacatagtggaacaagagatggatatacagaatggggtgattcttacatacctca |
1749299 |
T |
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| Q |
101 |
gacagtctctgtcatagaattcttagcaaaaaggttttgtatcta |
145 |
Q |
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|||||| |||| || || ||||||||| |||||||||||||||| |
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| T |
1749298 |
gacagtagctgtgattgatttcttagcacaaaggttttgtatcta |
1749254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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