View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_high_1 (Length: 458)
Name: NF9711_high_1
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 6 - 449
Target Start/End: Complemental strand, 5700772 - 5700333
Alignment:
| Q |
6 |
acttaatgcactaaaaatagaggaaaaatgctaacaagggtgtggccatatctccaatctaatattaacgagtcattacaaagagatttaactttaaaca |
105 |
Q |
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| T |
5700772 |
acttaatgcactaaaaatagaggaaaaatgctaacaagggtgtggccatatctccaatctaatatcaacgagtcattacaaagagatttaactttaaaca |
5700673 |
T |
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| Q |
106 |
attacaataaattagttttccacaaactctccaa--ccaaacctaattgtaccattttccactatcttctcatgaacaagagaattgcaaaagtcataag |
203 |
Q |
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| T |
5700672 |
aacacaataaattagttttccacaaactctccaagaccaaacctaatcgtaccattttccactatcttctcatgaacaagagaattacaaaagtcataag |
5700573 |
T |
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| Q |
204 |
aaatctagctcccaatgttctcaagaacattcttaaatttctctcatttaccctcttatagacgtttttcccacccctagaatctctcccaaaaggcatc |
303 |
Q |
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| T |
5700572 |
aaatctagctcccaatgttctcaagaacattcttaaatttctctcatttaccctcttataaaagtgtttcccacccctagaatctctcccaaaaggcata |
5700473 |
T |
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| Q |
304 |
agtcgttttccaagagtatattcatttggttcttcaaggattatacaaaaagaacaagaagaagaagaaagtttaaatagaggtccaaaacccgagccat |
403 |
Q |
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| T |
5700472 |
agtcgttttccaagagtatattcatttggttcttcaaggattatacaaaaagaacaaga------agaaagtttaaatagaggtccaaaacccgagccat |
5700379 |
T |
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| Q |
404 |
gcgccaagtgcatcactaacaacatgcacaacgtacaagcctatgc |
449 |
Q |
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| T |
5700378 |
gcgccaagcgcatcactaacaacatgcacaacgtacaagcctatgc |
5700333 |
T |
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