View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_high_31 (Length: 239)
Name: NF9711_high_31
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_high_31 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 41351149 - 41351370
Alignment:
| Q |
18 |
gaagttattaaacttctaagtattttaggcaaatctttgatatgataattccatcatttgttttaatactcatatctggaattttcctattgtaacttct |
117 |
Q |
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| T |
41351149 |
gaagttattaaacttctaagtattttaggcaaatctttgatatgataattccatcatttgttttaatactcatatctggcattttcctattgtaacttct |
41351248 |
T |
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| Q |
118 |
caaatttaaggagaaacttactttatttaacgattttgctgttttaaagttgaatggattgtagcatttaattaggcattttttccccctcatcatttat |
217 |
Q |
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| T |
41351249 |
caaatttaaggagaaacttaccttatttaacgattttgctgtttttaagttgaatggattgtagcatttaattaggcattttttccccctcatcatttat |
41351348 |
T |
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| Q |
218 |
tttatccctagatttacttcat |
239 |
Q |
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| T |
41351349 |
tttatccctagattttcttcat |
41351370 |
T |
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