View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_high_32 (Length: 236)
Name: NF9711_high_32
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 25064787 - 25064989
Alignment:
| Q |
19 |
gagttcgatgattaaaataaattaattagatgggagagaatgattgttcaaaatacatagagagaaagttaccaaagagagagaattgaaaggtagataa |
118 |
Q |
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| T |
25064787 |
gagttcgatgattaaaataaattaattagatgggagagaatgattgttcaaaatagatagagagaaagttaccaaagagagagaattgaaaggtagataa |
25064886 |
T |
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| Q |
119 |
tctgcatcccataacttatgagttgaaataattttctctatcttctcaatgttatgatcagatggtgtattgttttgaagagaagcactgcatcagttca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064887 |
tctgcatcccataacttatgagttgaaataattttctctatcttctcaatgttatgatcagatggtgtattgttttgaagagaagcactgcatcagttca |
25064986 |
T |
|
| Q |
219 |
agg |
221 |
Q |
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||| |
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| T |
25064987 |
agg |
25064989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 25086220 - 25086398
Alignment:
| Q |
16 |
agagagttcgatgattaaaataaattaattagatgggagagaatgattgttcaaaatacatagagagaaagttaccaaagagagagaattgaaaggtaga |
115 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| | ||||||||||||| |
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| T |
25086220 |
agagagttcgatgatgaaaataaattaattagatgggagagaatgattgttcaaaatagatagagaaaaagttaccagagagaggggattgaaaggtaga |
25086319 |
T |
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| Q |
116 |
taatctgcatcccataacttatgagttgaaataattttctctatcttctcaatgttatgatcagatggtgtattgtttt |
194 |
Q |
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|||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25086320 |
taatatgcatcccataacttctgagttgaaatagttttctctatcttctcaatgttatgatcagatggtgacttgtttt |
25086398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 25440521 - 25440593
Alignment:
| Q |
152 |
ttctctatcttctcaatgttatgatcagatgg-tgtattgtttt--gaagagaagcactgcatcagttcaagg |
221 |
Q |
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||||||| |||||| ||||||||||| | || ||||||||||| |||||||||||||||||||||| |||| |
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| T |
25440521 |
ttctctagtttctcactgttatgatcaaaagggtgtattgttttttgaagagaagcactgcatcagttgaagg |
25440593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 20896216 - 20896254
Alignment:
| Q |
26 |
atgattaaaataaattaattagatgggagagaatgattg |
64 |
Q |
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| T |
20896216 |
atgattaaaataaattatttagatgagagagaatgattg |
20896254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 30643621 - 30643659
Alignment:
| Q |
26 |
atgattaaaataaattaattagatgggagagaatgattg |
64 |
Q |
| |
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||||||||||||||||| ||||||| ||||||||||||| |
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| T |
30643621 |
atgattaaaataaattatttagatgagagagaatgattg |
30643659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 19431419 - 19431457
Alignment:
| Q |
26 |
atgattaaaataaattaattagatgggagagaatgattg |
64 |
Q |
| |
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||||||||||||||||| ||||||| ||||||||||||| |
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| T |
19431419 |
atgattaaaataaattatttagatgagagagaatgattg |
19431457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 19456338 - 19456374
Alignment:
| Q |
25 |
gatgattaaaataaattaattagatgggagagaatga |
61 |
Q |
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|||||||||||||||||| ||||||| |||||||||| |
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| T |
19456338 |
gatgattaaaataaattatttagatgagagagaatga |
19456374 |
T |
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