View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_high_33 (Length: 235)
Name: NF9711_high_33
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 29583412 - 29583216
Alignment:
| Q |
18 |
acatcagatatagaacttacaatttgcatatgtgaatggacaggtctgcaaagatcccagatggggaagatgctatgagagttacagcgaagacactgaa |
117 |
Q |
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| T |
29583412 |
acatcagatatagaacttacaatttgcatatgtgaatggacaggtctgcaaagatcccagatggggaagatgctatgagagttacagcgaagacactgaa |
29583313 |
T |
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| Q |
118 |
attgtccgaaatatgacttcttatgtttcaggtttgcaaggccaacctccagaaagacatccaaggggctacccatttgtggctgggaggtaggcag |
214 |
Q |
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| T |
29583312 |
attgtccgaaatatgacttcttatgtttcaggtttgcaaggccaacctccagaaagacatccaaggggttacccatttgtggctgggaggtaggcag |
29583216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 29610812 - 29610980
Alignment:
| Q |
41 |
ttgcatatgtgaatggacaggtctgcaaagatcccagatggggaagatgctatgagagttacagcgaagacactgaaattgtccgaaatatgacttctta |
140 |
Q |
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| T |
29610812 |
ttgcatatgtgaatgaataggtctgcaaagatcctagatggggtagatgctatgagagttacagcgaagacaccgaaattgtccaaaatatgacttctta |
29610911 |
T |
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| Q |
141 |
tgtttcaggtttgcaaggccaacctccagaaagacatccaaggggctacccatttgtggctgggaggta |
209 |
Q |
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| T |
29610912 |
tgtttcaggattgcaaggccaacctccagaacattatcgaaagggctacccatttttggctgggaggta |
29610980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 213
Target Start/End: Complemental strand, 25128659 - 25128503
Alignment:
| Q |
57 |
acaggtctgcaaagatcccagatggggaagatgctatgagagttacagcgaagacactgaaattgtccgaaatatgacttcttatgtttcaggtttgcaa |
156 |
Q |
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|||||| ||||||||||| || |||||||||||||||||| |||| || |||||||||||||| |||||||| |||||||| ||||| ||||||||| |
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| T |
25128659 |
acaggtatgcaaagatcctaggtggggaagatgctatgagtgttatagtgaagacactgaaatagtccgaaagatgacttccatcgtttctggtttgcaa |
25128560 |
T |
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| Q |
157 |
ggccaacctccagaaagacatccaaggggctacccatttgtggctgggaggtaggca |
213 |
Q |
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|| || || ||| || ||||| | || ||||||||||||||||| ||||||||| |
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| T |
25128559 |
ggtcagccgccacaaggacataaacatggatacccatttgtggctggaaggtaggca |
25128503 |
T |
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