View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_high_34 (Length: 229)
Name: NF9711_high_34
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42138333 - 42138111
Alignment:
| Q |
1 |
caaacagttgttgaataaaaggaatgctcttaatttgacataaaagaaaacaaccctctatttagaaacaatgctatatatatgacacataaacattaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42138333 |
caaacagttgttgaataaaaggaatgctcttaatttgacataaaagaaaacaaccctctatttagaaacaatgctatatatatgacacataaacattaca |
42138234 |
T |
|
| Q |
101 |
cataaccatcaccttctctcattacaaacttgagtacattacatacataactcttgttgttcacctgaactttgaagttacttcattttattaattacaa |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42138233 |
cataaccatcaccttctctcattacaaacttgagtacattacatacataactcttgttgttcacctgaactttaaagttacttcattttattaattacaa |
42138134 |
T |
|
| Q |
201 |
gcgaattgttttggcatggcatc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
42138133 |
gcgaattgttttggcatggcatc |
42138111 |
T |
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