View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_1 (Length: 842)
Name: NF9711_low_1
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 742; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 1 - 824
Target Start/End: Complemental strand, 49700200 - 49699375
Alignment:
| Q |
1 |
aaaatatccaaatattaattaacatcatagaaagaaatgaaataccaaatatagaacctatcaccgcaattaagtgcatagttttctcagacctgtaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49700200 |
aaaatatccaaatattaattaacatcatagaaagaaatgaaataccaaatatagaacctatcaccgcaattaagtgcatagttttctcagacctgtaata |
49700101 |
T |
|
| Q |
101 |
caaagtaggagttcctgcaaagatacagttaggaaggtttaaaaaagattgtactcacatattgcctagttctgcttgtggcatgaaaagctaaatttgt |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
49700100 |
caaagtaggagttcctgcaaagataaagttaggaaggtttaaaaaagattgtactcacatattgcctagttctgcttgtggcatgaacagctagatttgt |
49700001 |
T |
|
| Q |
201 |
catgtttccaatgatgtatgcagtaagtccctgattaaagagtatatagaaaatgtcaaatagcatctcccttgtatttacaggatgcagatcaccataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49700000 |
catgtttccaatgatgtatgcagtaagtccctgattaaagagtataaagaaaatgtcaaatagcatctcccttgtatttacaggatgcagatcaccataa |
49699901 |
T |
|
| Q |
301 |
ccaactgctgaaacagtgataatggaccagtatactgatgctacgtagagagacatcgtattcttcttgtcaaccgcatcaggaacaagcccaagccacg |
400 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49699900 |
ccaactgttgaaacagtgataatggaccagtatactgatgctacgtagagagacatcgtattcttcttgtcaaccgcatcaggaacaagcccaagccacg |
49699801 |
T |
|
| Q |
401 |
ttgtgcttaggtctttagcataatggtcggcaagaaagtagaaaatgcaggctccattatgtactacaaatagagtaacctacagtgtaaacacaagaca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49699800 |
ttgtgcttaggtctttagcataatggtcggcaagaaagtagaaaatgcaggctccattatgtactacaaatagagtaacctacagtgtaaacacaagaca |
49699701 |
T |
|
| Q |
501 |
atgcttgttataaacttattcagctccacgaggaaattaagtatgcaattaactagtaactgttgtaatagtaaatactcacacaaataaactttgaaca |
600 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49699700 |
atgcttgttataaactcattcagctccacgaggaaattaagtatgcaattaactagtaactgttgtaatagtaaatactcacacaaataaactttgaaca |
49699601 |
T |
|
| Q |
601 |
ccgcaaccagaagtagttataatgtctatccttttctaatctgaacattgagatatagatgaagaggagttattaccatgttaacnnnnnnnnnnntgct |
700 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49699600 |
ccgcaaccagaagtagttataatgtctatccttttctaatctgaacattgagatatagatgaagaggagttattaccatgttaac-aaaaaaaaaatgct |
49699502 |
T |
|
| Q |
701 |
acaaattgc-aattaatcggttaactagtatgtttcacttaaaattaattcttttgagcagcattttagttatgactgaaacaatcctaagtcagacttt |
799 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49699501 |
acaaattgcaaattattcggttaactagtatgtttcacttaaaattaattcttttgagcagcattttagttatgactgaaacaatcctaagtcagacttt |
49699402 |
T |
|
| Q |
800 |
attta--tctttgtccaagtttagata |
824 |
Q |
| |
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||||| |||||||||||||||||||| |
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|
| T |
49699401 |
atttatctctttgtccaagtttagata |
49699375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 2243335 - 2243404
Alignment:
| Q |
244 |
atatagaaaatgtcaaatagcatctcccttgtatttacaggatgcagatcaccataaccaactgctgaaa |
313 |
Q |
| |
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||||| ||||||||||||| ||| || ||| ||||||||||||| ||| ||||||||||||| ||||| |
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| T |
2243335 |
atataaaaaatgtcaaatatcatttcatctgtgtttacaggatgcaaatctccataaccaactgttgaaa |
2243404 |
T |
|
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