View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9711_low_10 (Length: 454)
Name: NF9711_low_10
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Original strand, 1034224 - 1034648
Alignment:
| Q |
17 |
attgattatccataagtattctgggataagacagagattcaacctaatctaaacttaggatatcatatttccaactgaaatggaatttaactacaaaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1034224 |
attgattatccataagtattctgggataagacaga--ttcaacctaatctaaacttaggatatcatatttccaactgaaatggaatttaactacaaaata |
1034321 |
T |
|
| Q |
117 |
ggtaaagctgaactaacatggtaatactgagcagctgctgcaaaaataactgatcatattcatg-caaatacaataaaaagtagatcaaggaatccaaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1034322 |
ggtaaagctgaactaacatggtaatactgagcagctgctgcaaaaataactgatcatattcatggcaaatacaataaaaagtagatcaaggaatccaaac |
1034421 |
T |
|
| Q |
216 |
taaaagaactcaaaatccagatatttacccccagacttcatttcattattccccgacatcctcttactagtactgccaaccccgacagcatcaactggtg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1034422 |
taaaagaactcaaaatccagatatttacccccagacttcatttcattattccccgacatcctcttactagtactgccaaccccgacagcatcaactggtg |
1034521 |
T |
|
| Q |
316 |
gtccaaccttcattggtggtggcggtggcggcggctcattttccactggtcttggtacttctggtggtgtgctgcacctaatcaatgcccagtttacacc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1034522 |
gtccaaccttcattggtggtggcggtggcggcggctcattttccactggtcttggtacttctggtggtgtgctgcacctaatcaatgcccagtttacacc |
1034621 |
T |
|
| Q |
416 |
ttcaaagaaaggatgctgcttgatctc |
442 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1034622 |
ttcaaagaaaggatgctgcttgatctc |
1034648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 31313938 - 31313998
Alignment:
| Q |
378 |
ggtggtgtgctgcacctaatcaatgcccagtttacaccttcaaagaaaggatgctgcttga |
438 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
31313938 |
ggtggtgtgctgcacctaatcaacgcccagttcacaccttcaaagaaagggtgctgtttga |
31313998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 31313751 - 31313813
Alignment:
| Q |
182 |
aaatacaataaaaagtagatcaaggaatccaaactaaaagaactcaaaatccagatatttacc |
244 |
Q |
| |
|
||||||| || |||| |||| |||||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
31313751 |
aaatacagtacaaagaagattaaggaatccaaactaaaaaaactcaaagtcaagatatttacc |
31313813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University