View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_11 (Length: 453)
Name: NF9711_low_11
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 52 - 432
Target Start/End: Complemental strand, 55477178 - 55476798
Alignment:
| Q |
52 |
tcagctgaacttaacatcaatatatggcctttctctcggagtaggtcttctggaaactcagttagcagacccaagtcctccaccggagctccggttaccc |
151 |
Q |
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| T |
55477178 |
tcagctgaacttaacatcaatatatggcctttctctcggagtagatcttctggaaactcagttagcagacccaagtcctccaccggagctccggttaccc |
55477079 |
T |
|
| Q |
152 |
ggaaagtaaacagtgcgccttgctcgaggagcaactctgccggagactcaaagtcaaggaagttgccaagtagtcctgctcgggtgggggtccatttggg |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55477078 |
ggaaagtaaacagtgcgccttgctcgaggagcaactctgccggagactcaaagtcaaggaagttgccaagtagtcctgctcgggtgggggtccatttggg |
55476979 |
T |
|
| Q |
252 |
aaggagcagcccagtttggcaggttcgccatgccgctaagaacacagtgaaccctgataagtctaaaagagaaaccaccacgagtcgccggagtaggttc |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55476978 |
aaggagcagcccagtttggcaggttcgccatgccgctaagaacacagtgaaccctgataagtctaaaagagaaaccaccacaagtcgccggagtaggttc |
55476879 |
T |
|
| Q |
352 |
gcttcaaccacaggtggtggtggtggtagtggcaaagcgaaggtattgaatttgagtgttccaatgtgtgttgggtacagt |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55476878 |
acttcaaccacaggtggtggtggtggtagtggcaaagcgaaggtattgaatttgagtgttccaatgtgtgttgggtacagt |
55476798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 55477229 - 55477199
Alignment:
| Q |
1 |
gtgaagaaaaaagagaaaagagttggaaaca |
31 |
Q |
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| T |
55477229 |
gtgaagaaaaaagagaaaagagttggaaaca |
55477199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 227
Target Start/End: Complemental strand, 8845411 - 8845303
Alignment:
| Q |
119 |
gacccaagtcctccaccggagctccggttacccggaaagtaaacagtgcgccttgctcgaggagcaactctgccggagactcaaagtcaaggaagttgcc |
218 |
Q |
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||||||| | || ||||||||||||||| ||||||||||| |||||||| ||||| || | |||||||| |||||||| |||||||| || || | ||| |
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| T |
8845411 |
gacccaaattcttcaccggagctccggtgacccggaaagttaacagtgcaccttgttctcgtagcaactccgccggagaatcaaagtcgagaaaatggcc |
8845312 |
T |
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| Q |
219 |
aagtagtcc |
227 |
Q |
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||||||||| |
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| T |
8845311 |
aagtagtcc |
8845303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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