View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9711_low_12 (Length: 433)

Name: NF9711_low_12
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9711_low_12
NF9711_low_12
[»] chr7 (1 HSPs)
chr7 (17-423)||(37188660-37189064)
[»] chr4 (11 HSPs)
chr4 (31-230)||(53499217-53499416)
chr4 (22-278)||(53492875-53493133)
chr4 (31-225)||(53495316-53495510)
chr4 (34-218)||(52590974-52591158)
chr4 (333-423)||(53499025-53499115)
chr4 (334-423)||(53492720-53492809)
chr4 (34-203)||(53488634-53488803)
chr4 (30-171)||(53502398-53502539)
chr4 (335-422)||(53495068-53495155)
chr4 (352-416)||(53502170-53502234)
chr4 (387-423)||(53489312-53489348)
[»] chr2 (2 HSPs)
chr2 (31-221)||(16942593-16942783)
chr2 (31-221)||(17013258-17013448)
[»] chr3 (2 HSPs)
chr3 (50-179)||(38214037-38214166)
chr3 (50-179)||(38218256-38218385)
[»] chr8 (4 HSPs)
chr8 (67-171)||(35018035-35018139)
chr8 (50-150)||(42991368-42991468)
chr8 (374-425)||(43347380-43347431)
chr8 (86-122)||(33811103-33811139)
[»] chr6 (3 HSPs)
chr6 (72-122)||(33450458-33450508)
chr6 (376-427)||(33449594-33449645)
chr6 (91-152)||(10379795-10379856)
[»] chr1 (1 HSPs)
chr1 (86-122)||(47495938-47495974)


Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 37189064 - 37188660
Alignment:
Q  17 cagtacatgcattagcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37189064 cagtacatgcattagcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtagcccaatcatcagc 37188965  T
Q  117 attccaaagactagaatagattctcattggttggcttttggggaatggaacaccatttgattccatgtttttgaattccctaattggagttccatccaca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37188964 attccaaagactagaatagattctcattggttggcttttggggaatggaacaccatttgattccatgtttttgaattccctaattggacttccatccaca 37188865  T
Q  217 gagaaactgaaaaaataaacacaatttattagacttatttagttacttccaacacaagtaattgcnnnnnnnnnnncaatttttgtttatttaattattt 316  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||    
T  37188864 gagaaactgaaaaaataaacagaatttattagacttatttagttacttccaacacaagtaattgc--aaaaaaaaacaatttttgtttatttaattattt 37188767  T
Q  317 taaggaattaagttaatacttacacaattcgttgtgggttccagaggatggaataagtgtgaaaatctgcagttgggtcaaaccataggtagaattgttg 416  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37188766 taaggaattagtttagtacttacacaattcgttgtgggttccagaggatggaataagtgtgaaaatctgcagttgggtcaaaccataggtagaattgttg 37188667  T
Q  417 ctctctg 423  Q
    |||||||    
T  37188666 ctctctg 37188660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 31 - 230
Target Start/End: Complemental strand, 53499416 - 53499217
Alignment:
Q  31 gcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactag 130  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |    
T  53499416 gcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttg 53499317  T
Q  131 aatagattctcattggttggcttttggggaatggaacaccatttgattccatgtttttgaattccctaattggagttccatccacagagaaactgaaaaa 230  Q
    | || || |||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  53499316 agtatatcctcattggttggtttttggggaatggtacaccatttgattccatgttcttgaattccctaattggagttccatctacagagaaactgaaaaa 53499217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 53493133 - 53492875
Alignment:
Q  22 catgcattagcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattcc 121  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  53493133 catgcattagcattgaagtgtctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattcc 53493034  T
Q  122 aaagactagaatagattctcattggttggcttttggggaatggaacaccatttgattccatgtttttgaattccctaattggagttccatccacagagaa 221  Q
    | ||||| || || || |||||||||||| |||||||||||||||| ||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  53493033 agagacttgagtatatcctcattggttggtttttggggaatggaacgccacttgattcaatgttcttgaattctctaattggagttccatccacagagaa 53492934  T
Q  222 actgaaa-aaataaacaca-atttattagacttatttagttacttccaacacaagtaat 278  Q
    ||||||| ||||| ||||| |   | ||| || |||||||| |||||||||||||||||    
T  53492933 actgaaataaatatacacagagagaatagtctaatttagtttcttccaacacaagtaat 53492875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 53495510 - 53495316
Alignment:
Q  31 gcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactag 130  Q
    |||||||| || ||||| || ||||| || |||||||| | |||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||| |    
T  53495510 gcattgaaattcctatatgatgcagtgaatggagcatttgtccaatctgtcttgacaagaccacctcttgttgcccaatcatcagcattccatagacttg 53495411  T
Q  131 aatagattctcattggttggcttttggggaatggaacaccatttgattccatgtttttgaattccctaattggagttccatccacagagaaactg 225  Q
    |||| || |||||||||||  | || || |||| ||| || |||||||||||||| |||||||| || ||||| |||||||||||||| ||||||    
T  53495410 aatatatcctcattggttgattctttggaaatgcaactccttttgattccatgttcttgaattctcttattggtgttccatccacagaaaaactg 53495316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 218
Target Start/End: Complemental strand, 52591158 - 52590974
Alignment:
Q  34 ttgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactagaat 133  Q
    |||||||||| ||| |||||||| || || || | ||||||||| || ||  | || || || ||||||||||||| ||| |||| ||||||||| ||||    
T  52591158 ttgaagtttccatatgaagcagtgaatggggcttgggaccaatcagttttcgctagacctccccttgtggcccaattatctgcatcccaaagacttgaat 52591059  T
Q  134 agattctcattggttggcttttggggaatggaacaccatttgattccatgtttttgaattccctaattggagttccatccacaga 218  Q
    | || ||||||| ||||||||| || || |||| ||| ||||||||||  || ||||||||||| | |||||| |||||||||||    
T  52591058 atatactcattgcttggcttttaggaaaaggaataccttttgattccaaattcttgaattcccttaatggagtcccatccacaga 52590974  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 333 - 423
Target Start/End: Complemental strand, 53499115 - 53499025
Alignment:
Q  333 tacttacacaattcgttgtgggttccagaggatggaataagtgtgaaaatctgcagttgggtcaaaccataggtagaattgttgctctctg 423  Q
    |||||||||||| ||||| || ||||| || || || || ||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  53499115 tacttacacaatacgttgaggattccatagaattgagtatgtgtgaaaatctgcagttgggtcaaaccaaaggtaaaattgttgctctctg 53499025  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 423
Target Start/End: Complemental strand, 53492809 - 53492720
Alignment:
Q  334 acttacacaattcgttgtgggttccagaggatggaataagtgtgaaaatctgcagttgggtcaaaccataggtagaattgttgctctctg 423  Q
    ||||||||||| |||||||| ||||| || || || || ||||||||||||||||||||||||||||| ||||| | |||||||||||||    
T  53492809 acttacacaatacgttgtggattccatagaattgagtatgtgtgaaaatctgcagttgggtcaaaccaaaggtaaatttgttgctctctg 53492720  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 53488634 - 53488803
Alignment:
Q  34 ttgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactagaat 133  Q
    |||||||| ||| ||||||||||||| ||||| |    ||||||||| || ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||    
T  53488634 ttgaagttcctaaaagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcggcattccatagacttgaat 53488733  T
Q  134 agattctcattggttggcttttggggaatggaacaccatttgattccatgtttttgaattccctaattgg 203  Q
    | | ||||||||| ||  | || ||  |||||||||| |     |||| |||||||||||||||||||||    
T  53488734 ataatctcattggctgcttctttggatatggaacaccttcactctccaagtttttgaattccctaattgg 53488803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 171
Target Start/End: Complemental strand, 53502539 - 53502398
Alignment:
Q  30 agcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagacta 129  Q
    |||||| || ||||| || ||||| || || ||||| || | |||||||||||| || |||||||||||||| ||||| | ||| |||||||| | |||     
T  53502539 agcattaaaatttctgtaggaagctgtgaatggagcctttgtccaatctgtcttgactagtccacctcttgttgcccagttatctgcattccacaaactt 53502440  T
Q  130 gaatagattctcattggttggcttttggggaatggaacacca 171  Q
    ||||| ||||||||||||||| | || ||||| || ||||||    
T  53502439 gaatatattctcattggttggttctttgggaagggcacacca 53502398  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 422
Target Start/End: Complemental strand, 53495155 - 53495068
Alignment:
Q  335 cttacacaattcgttgtgggttccagaggatggaataagtgtgaaaatctgcagttgggtcaaaccataggtagaattgttgctctct 422  Q
    |||||||||| ||||| || ||||| || ||||| || ||||||||||| |||||||| ||||||||||| | ||||||||| |||||    
T  53495155 cttacacaatgcgttgaggattccaaagaatggagtatgtgtgaaaatcagcagttggatcaaaccatagatggaattgttgttctct 53495068  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 53502234 - 53502170
Alignment:
Q  352 gggttccagaggatggaataagtgtgaaaatctgcagttgggtcaaaccataggtagaattgttg 416  Q
    |||||||| | ||| ||||||||||||||||| || | ||||||||||||||| |||||||||||    
T  53502234 gggttccatatgatagaataagtgtgaaaatcagctgctgggtcaaaccatagatagaattgttg 53502170  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 423
Target Start/End: Original strand, 53489312 - 53489348
Alignment:
Q  387 agttgggtcaaaccataggtagaattgttgctctctg 423  Q
    |||||||||||||||||  ||||||||||||||||||    
T  53489312 agttgggtcaaaccataaatagaattgttgctctctg 53489348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 16942783 - 16942593
Alignment:
Q  31 gcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactag 130  Q
    ||||||||||||||||| || ||| | || |||||||||| ||||||||| || ||||  |||||||| |||||||||| ||| |||||||||||||| |    
T  16942783 gcattgaagtttctatatgaggcaatgaatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttg 16942684  T
Q  131 aatagattctcattggttggcttttggggaatggaacaccatttgattccatgtttttgaattccctaattggagttccatccacagagaa 221  Q
    |||| || ||||| | |||| | || || || ||||| || |||||||| |  || ||||| ||||| |||||  ||||||||||||||||    
T  16942683 aatatatcctcatggcttggttctttggaaaaggaaccccttttgattctaaattcttgaactcccttattggtcttccatccacagagaa 16942593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 17013448 - 17013258
Alignment:
Q  31 gcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactag 130  Q
    ||||||||||||||||| || ||| | || |||||||||| ||||||||| || ||||  |||||||| |||||||||| ||| |||||||||||||| |    
T  17013448 gcattgaagtttctatatgaggcaatgaatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttg 17013349  T
Q  131 aatagattctcattggttggcttttggggaatggaacaccatttgattccatgtttttgaattccctaattggagttccatccacagagaa 221  Q
    |||| || ||||| | |||| | || || || ||||| || |||||||| |  || ||||| ||||| |||||  ||||||||||||||||    
T  17013348 aatatatcctcatggcttggttctttggaaaaggaaccccttttgattctaaattcttgaactcccttattggtcttccatccacagagaa 17013258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 179
Target Start/End: Original strand, 38214037 - 38214166
Alignment:
Q  50 aagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactagaatagattctcattggttg 149  Q
    |||| ||||| || || ||||||||||| || || || |  ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  38214037 aagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttg 38214136  T
Q  150 gcttttggggaatggaacaccatttgattc 179  Q
    | | || |||||||||| |||| |||||||    
T  38214137 gttctttgggaatggaataccaattgattc 38214166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 179
Target Start/End: Original strand, 38218256 - 38218385
Alignment:
Q  50 aagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactagaatagattctcattggttg 149  Q
    |||| ||||| || || ||||||||||| || || || |  ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  38218256 aagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttg 38218355  T
Q  150 gcttttggggaatggaacaccatttgattc 179  Q
    | | || |||||||||| |||| |||||||    
T  38218356 gttctttgggaatggaataccaattgattc 38218385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 35018139 - 35018035
Alignment:
Q  67 ttggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactagaatagattctcattggttggcttttggggaatggaa 166  Q
    ||||||||||| || || || | ||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| | || || || ||||    
T  35018139 ttggaccaatcagttttcaccaatccacctcttgtggcccaatcatcagcattccacaggctggaatagattctcattggttggttctttggaaaaggaa 35018040  T
Q  167 cacca 171  Q
    |||||    
T  35018039 cacca 35018035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 42991468 - 42991368
Alignment:
Q  50 aagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactagaatagattctcattggttg 149  Q
    |||| ||||| || || ||||||||||| || || || |  ||||||||||| |||||||| ||||| ||||||||||| ||||| |||||||| |||||    
T  42991468 aagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcttcagcgttccaaagacttgaatatattctcatcggttg 42991369  T
Q  150 g 150  Q
    |    
T  42991368 g 42991368  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 425
Target Start/End: Complemental strand, 43347431 - 43347380
Alignment:
Q  374 tgtgaaaatctgcagttgggtcaaaccataggtagaattgttgctctctgct 425  Q
    |||||||||| ||||||||||||||||| ||||  |||||||||||||||||    
T  43347431 tgtgaaaatcagcagttgggtcaaaccagaggtgaaattgttgctctctgct 43347380  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 33811103 - 33811139
Alignment:
Q  86 caagtccacctcttgtggcccaatcatcagcattcca 122  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  33811103 caagtccacctcttgtagcccaatcatctgcattcca 33811139  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 33450508 - 33450458
Alignment:
Q  72 ccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattcca 122  Q
    ||||| ||| |||||||||||||||||||||||||||| ||| ||||||||    
T  33450508 ccaatttgttttaacaagtccacctcttgtggcccaattatctgcattcca 33450458  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 33449645 - 33449594
Alignment:
Q  376 tgaaaatctgcagttgggtcaaaccataggtagaattgttgctctctgcttc 427  Q
    |||||||| ||||||||||||||||| || || |||||||||||||| ||||    
T  33449645 tgaaaatcagcagttgggtcaaaccaaagataaaattgttgctctctacttc 33449594  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 10379795 - 10379856
Alignment:
Q  91 ccacctcttgtggcccaatcatcagcattccaaagactagaatagattctcattggttggct 152  Q
    ||||| |||||||||||||||||||||||||| | ||||   || ||| |||||||||||||    
T  10379795 ccaccccttgtggcccaatcatcagcattccataaactattgtatattttcattggttggct 10379856  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 47495974 - 47495938
Alignment:
Q  86 caagtccacctcttgtggcccaatcatcagcattcca 122  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  47495974 caagtccacctcttgtagcccaatcatctgcattcca 47495938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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