View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9711_low_13 (Length: 424)
Name: NF9711_low_13
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 47191900 - 47192298
Alignment:
| Q |
16 |
acaaaatccaaacaacccaccattgtttggatggctaacagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggtaatctca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47191900 |
acaaaatccaaacaacccaccattgtttggatggctaacagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggtaatctca |
47191999 |
T |
|
| Q |
116 |
ttttaaccgatgcagacagaaaaagaacaccaatttggtccacttcatccttttctccttttccattacagctcaagcttcaaaacaatggcaacctcgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47192000 |
ttttaaccgatgcagacagaaaaagaacaccaatttggtccacttcatccttttctccttttccattacagctcaagcttcaaaacaatggcaacctcgt |
47192099 |
T |
|
| Q |
216 |
tctcgccacgaccaacggtaacattagtatcctttggcaaagctttgattttccaacagatactcttcttcctggccaagaaattaatgagcgagcaacc |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47192100 |
tctctccacgaccaacggtaacattagtatcctttggcaaagctttgattttccaacagatactcttcttcctggccaagaaattaatgagcgagcaacc |
47192199 |
T |
|
| Q |
316 |
ttagtttcatccaaaagtgaaacaaactattcctcaggtttctataagttttatttcgacaacgacaatgctcttcgtcttctattcaaaagtcctttg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47192200 |
ttagtttcatccaaaagtgaaacaaactattcctcaggtttctataagttttatttcgacaacgacaatgctcttcgtcttctattcaaaagtcctttg |
47192298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 26745804 - 26745712
Alignment:
| Q |
38 |
ttgtttggatggctaacagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggtaatctcattttaaccgatgcag |
130 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| |||| ||||| ||| || ||| |||||| || || |||||||||||||| |||| |
|
|
| T |
26745804 |
ttgtttggatggctaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttctcaaaactggcaacctcattttaaccgacgcag |
26745712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 26693264 - 26693303
Alignment:
| Q |
250 |
tggcaaagctttgattttccaacagatactcttcttcctg |
289 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
26693264 |
tggcaaagctttgattttccaacagataccctccttcctg |
26693303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 26677184 - 26677092
Alignment:
| Q |
38 |
ttgtttggatggctaacagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggtaatctcattttaaccgatgcag |
130 |
Q |
| |
|
||||||||||||| || | |||||||| |||||||| |||| ||||| ||| || ||| |||||| ||| || ||| | ||||||||||||| |
|
|
| T |
26677184 |
ttgtttggatggcaaatcgtgaccaaccagttaacggaaaacgctcaacactttcccttctcaaaaccggcaacctcgtcttaaccgatgcag |
26677092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 26688906 - 26688998
Alignment:
| Q |
38 |
ttgtttggatggctaacagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggtaatctcattttaaccgatgcag |
130 |
Q |
| |
|
||||||||||||| || | |||||||| |||||||| |||| ||||| ||| || ||| |||||| ||| || ||| | ||||||||||||| |
|
|
| T |
26688906 |
ttgtttggatggcaaatcgtgaccaaccagttaacggaaaacgctcaacactttcccttctcaaaaccggcaacctcgtcttaaccgatgcag |
26688998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University