View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_14 (Length: 422)
Name: NF9711_low_14
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_14 |
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| [»] scaffold0010 (1 HSPs) |
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| [»] scaffold0839 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 31716413 - 31716811
Alignment:
| Q |
1 |
gttgtataaccatttcttatgatgttaagtaacacttgagagttagtttccacataaagggaagtgaagagaagctgcttgggaaggcggagatcatatg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31716413 |
gttgtataaccatttcttatgatattaagtaacacttgagagttagtttccacataaagggaagtgaagagaagctgcttgggaaggcggagatcatatg |
31716512 |
T |
|
| Q |
101 |
atgttaaaagtagggagatcactttcggatcctttctgtcaaaatctgcttataatagttgcataatagaatattgattggcgcagaatatggcaactga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31716513 |
atgttaaaagtagggagatcactttcggatcctttctgtcaaaatctgcttataatagttgcataatagaatattgattggcgcagaatatggcaactga |
31716612 |
T |
|
| Q |
201 |
acgcaccaccgtgtgtccgttccttcatttggcgtcttatacatcaatgccttctaataaggtcccggcttgtgcaaaaggggatcctttgtgacgatac |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| |
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| T |
31716613 |
acgc--------gtgtccgttccttcatttggcgtcttatacatcaatgccttctaataaggtctcgacttgtgcaaaaggggatcctttgtgataatac |
31716704 |
T |
|
| Q |
301 |
ttatgtggattgtaatgaattggtggaaacgaaaatgcacatccttttgtttgctttaaggcaacaagctattgtaaattactgaagctggataatcctg |
400 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31716705 |
ttatgtggattgtaatgaattggtggaaacaaaaatgcacatccttttgtttgctttaaggcaacaagctattgtaaattactgaagctggataatcttg |
31716804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 183 - 397
Target Start/End: Complemental strand, 11596920 - 11596705
Alignment:
| Q |
183 |
gcagaatatggcaactgaacgcaccaccgtgtgtccgttccttcatttggcgtcttatacatcaatgccttctaataaggtcccggcttgtgcaaaaggg |
282 |
Q |
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|
||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||| |||| |||||||||| || || ||| || |||| ||||||||| |
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| T |
11596920 |
gcagaatatggcagttgaaggcaccaccgcgtgttcgttccttcatttggcgtcttgtacaccaatgccttccaacaaagtctcgacttgcgcaaaaggg |
11596821 |
T |
|
| Q |
283 |
gatcctttgtgacgatacttatgtggattgtaatgaattggtggaaacgaaaatgcacatcct-tttgtttgctttaaggcaacaagctattgtaaatta |
381 |
Q |
| |
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||||| ||| |||||||||| ||||| ||||||||||| | ||||| |||||| ||| | |||||||||| |||||||||||||| ||| |||||| |
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| T |
11596820 |
gatcccttgcgacgatacttgtgtggtgtgtaatgaattagcagaaacaccaatgcatatcttctttgtttgctctaaggcaacaagctgttggaaatta |
11596721 |
T |
|
| Q |
382 |
ctgaagctggataatc |
397 |
Q |
| |
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||||||||||||||| |
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| T |
11596720 |
ttgaagctggataatc |
11596705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 8757945 - 8758023
Alignment:
| Q |
188 |
atatggcaactgaacgcaccaccgtgtgtccgttccttcatttggcgtcttatacatcaatgccttctaataaggtccc |
266 |
Q |
| |
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|||||||| ||||| | ||||||| |||| ||||||||||||||||||||| |||| |||||||||| || |||||||| |
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| T |
8757945 |
atatggcagctgaaggaaccaccgcgtgttcgttccttcatttggcgtcttgtacaccaatgccttccaacaaggtccc |
8758023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 168 - 402
Target Start/End: Complemental strand, 237600 - 237365
Alignment:
| Q |
168 |
agaatattgattggcgcagaatatggcaactgaacgcaccaccgtgtgtccgttccttcatttggcgtcttatacatcaatgccttctaataaggtcccg |
267 |
Q |
| |
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|||||||||| ||| ||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||| |||| |||||||||| || |||||| || |
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| T |
237600 |
agaatattgactggggcagaatatggcagctgaaggcaccaccgcgtgttcgttccttcatttggcgtcttgtacaccaatgccttccaacaaggtctcg |
237501 |
T |
|
| Q |
268 |
gcttgtgcaaaaggggatcctttgtgacgatacttatgtggattgtaatgaattggtggaaacgaaaatgcacatc-cttttgtttgctttaaggcaaca |
366 |
Q |
| |
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||| ||||||||||||||| ||| |||||||||| ||||| ||||||||||| | |||||| ||||||||||| ||||||||||| |||||||||| |
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| T |
237500 |
acttctgcaaaaggggatccattgcgacgatacttgtgtggtctgtaatgaattagcggaaacacaaatgcacatcttttttgtttgctctaaggcaaca |
237401 |
T |
|
| Q |
367 |
agctattgtaaattactgaagctggataatcctgtt |
402 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| |
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| T |
237400 |
gactattggaaattactgaagctggataatcttgtt |
237365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 168 - 402
Target Start/End: Complemental strand, 8772163 - 8771928
Alignment:
| Q |
168 |
agaatattgattggcgcagaatatggcaactgaacgcaccaccgtgtgtccgttccttcatttggcgtcttatacatcaatgccttctaataaggtcccg |
267 |
Q |
| |
|
|||||||||| ||| || |||||||||| |||| ||||||||| |||| ||||||||||||||||||||| |||| |||||||||| || ||||||||| |
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| T |
8772163 |
agaatattgactggggccgaatatggcagttgaaggcaccaccgcgtgttcgttccttcatttggcgtcttgtacaccaatgccttccaacaaggtcccg |
8772064 |
T |
|
| Q |
268 |
gcttgtgcaaaaggggatcctttgtgacgatacttatgtggattgtaatgaattggtggaaacgaaaatgcacatc-cttttgtttgctttaaggcaaca |
366 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| ||||| ||||||||||| | |||||| ||||||||||| ||||||||||| |||||||||| |
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|
| T |
8772063 |
acttgtgcaaaaggggatcccttgcgacgatacttgtgtggtgtgtaatgaattagcggaaacacaaatgcacatcttttttgtttgctctaaggcaaca |
8771964 |
T |
|
| Q |
367 |
agctattgtaaattactgaagctggataatcctgtt |
402 |
Q |
| |
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| || || |||||||||||||||||||||| |||| |
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| T |
8771963 |
aactgctggaaattactgaagctggataatcttgtt |
8771928 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0839 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0839
Description:
Target: scaffold0839; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 262 - 402
Target Start/End: Complemental strand, 5270 - 5129
Alignment:
| Q |
262 |
gtcccggcttgtgcaaaaggggatcctttgtgacgatacttatgtggattgtaatgaattggtggaaacgaaaatgcacatc-cttttgtttgctttaag |
360 |
Q |
| |
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|||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||||||| |||||| ||||||||||| ||||||||||| |||| |
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| T |
5270 |
gtcccgacttgtgcaaaaggggatcccttgcgacgatacttgtgtggtctgtaatgaattaacggaaacacaaatgcacatcttttttgtttgctctaag |
5171 |
T |
|
| Q |
361 |
gcaacaagctattgtaaattactgaagctggataatcctgtt |
402 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||||||| |||| |
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|
| T |
5170 |
gcaacaagctgttggaaattactgaagttggataatcttgtt |
5129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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