View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_15 (Length: 420)
Name: NF9711_low_15
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_15 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 51199241 - 51198841
Alignment:
| Q |
19 |
cctgtcctagagacctgtaattggaaatagaaatatacttaggaaagtaaaacatgttctccgtctgtaacaaaatataaggaaataaagtgcatgtatt |
118 |
Q |
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| T |
51199241 |
cctgtcctagagacctgtaattggaaatagaaatatacttaggaaagtaaaacatgttctccgtctttaacaaaatataaggaaaaaaagtgcatgtatt |
51199142 |
T |
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| Q |
119 |
tgggccaaattgtaaattctcagatagatgaagaatgtaaatttagatattataagctcgagtgaagaaaaaggaacaaaaaacttacatggagccagtc |
218 |
Q |
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| T |
51199141 |
tgggccagattgtaaattctcagatagatgaagaatgtaaatttagaaattataagctcgagtgaagaaaa-ggaacaaaaaacttacatggagccagtc |
51199043 |
T |
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| Q |
219 |
aatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctataaccatttttccaccaaaccatactgctaaaccataactagcaataa |
318 |
Q |
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| T |
51199042 |
aatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctattaccatttttccaccaaaccatactgctaaaccataactagcaataa |
51198943 |
T |
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| Q |
319 |
caacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctcttttactacagttttgtaagcatcaattaaggactgatcatctttagctatggc |
418 |
Q |
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| T |
51198942 |
caacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctcttttactacagttttgtaagcatcaattaaggactgatcatatttagctatggc |
51198843 |
T |
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| Q |
419 |
ct |
420 |
Q |
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| T |
51198842 |
ct |
51198841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 51156280 - 51156096
Alignment:
| Q |
182 |
gaagaaaaaggaacaaaaaacttacatggagccagtcaatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctataaccattttt |
281 |
Q |
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| T |
51156280 |
gaagaaaaaacaacacaaatcttacattgaaccagtcaatacagcaaaaattacagtcataacatccccacctgtatatcctttctctattatcaatttc |
51156181 |
T |
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| Q |
282 |
ccaccaaaccatactgctaaaccataactagcaataacaacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctctt |
366 |
Q |
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| T |
51156180 |
ccaccataccaaacagccaaaccataactggagataaaaacaaaaaagagtgcagcaaaccccacaccagatgctagtgcctctt |
51156096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 217 - 366
Target Start/End: Complemental strand, 51145105 - 51144956
Alignment:
| Q |
217 |
tcaatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctataaccatttttccaccaaaccatactgctaaaccataactagca-a |
315 |
Q |
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|||||||||||||||||| ||||| ||| |||||||| || ||||||||||| || | |||||| |||||||||||||| || ||||||||||| ||| | |
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| T |
51145105 |
tcaatacagcaaaaattacagtcataacgtcccctcctgtgtatcctttctcaattatcattttcccaccaaaccatacagccaaaccataact-gcaga |
51145007 |
T |
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| Q |
316 |
taacaacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctctt |
366 |
Q |
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||| |||||| |||||| ||||||||| | |||||| || |||||||||| |
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| T |
51145006 |
taaaaacaaaaaagagtgtaccaaacccaacaccagatgccagtgcctctt |
51144956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 366
Target Start/End: Original strand, 29937828 - 29937992
Alignment:
| Q |
202 |
cttacatggagccagtcaatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctataaccatttttccaccaaaccatactgctaa |
301 |
Q |
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||||||| || |||||||||| ||||| | || ||||| ||| || ||||| ||||||||||||||||| | || ||| |||||||||||||| || || |
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| T |
29937828 |
cttacattgaaccagtcaatattgcaaatagtacagtcataacatcgcctcctgtatatcctttctctattatcaatttcccaccaaaccatacagccaa |
29937927 |
T |
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| Q |
302 |
accataactagcaataacaacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctctt |
366 |
Q |
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|| ||||| | |||| |||||| ||| || | ||||||| | |||||| ||||||||||||| |
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| T |
29937928 |
actgtaactggagataaaaacaaaaaagattgtagcaaaccccacaccagatgctagtgcctctt |
29937992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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