View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_17 (Length: 396)
Name: NF9711_low_17
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 38681100 - 38680730
Alignment:
| Q |
18 |
aggagaacccacacatccctgaatcatcttttccatatagacaaaagtttgtaaattaatggttacattaannnnnnngaacttctgacttaaattaagt |
117 |
Q |
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| T |
38681100 |
aggagaacccactcatccctgaatcattttttccatatagacaaaagtttgtaaattaatggttacattaatttttttgaacttctgacttaaattaagt |
38681001 |
T |
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| Q |
118 |
tcattcagtgttgcttatagttcactaaccgaactaacttgaaataagatgtattaatttgttggcttcgaccccttttgtaat---nnnnnnnnnngta |
214 |
Q |
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| T |
38681000 |
tcattcagtgttgcttatagttcactaaccgaactaacttgaaataagatgtattaatttgttggcttcgatcccttttgtaataaaaaaaaaaaatgta |
38680901 |
T |
|
| Q |
215 |
ttcatttgcgattaaatgnnnnnnnggtacaatttattattagagtgatttaatttgtacataggcataagttcattttttattgctgc--atagacact |
312 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
38680900 |
ttcatttgcgattaaatgtttttttggtacaatttattattagagtgatttaatttgtacataggcataagttcattttttattgctgcatatacacact |
38680801 |
T |
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| Q |
313 |
tacaaatcaatcgcgattaacctcaaattctttagagctcgcatgaggttggagtaattagtaattacatt |
383 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38680800 |
tacaaatcaatcgcgattaacctcaaattcttaagagctcgcatgaggttggagtaattagtaattacatt |
38680730 |
T |
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