View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_19 (Length: 391)
Name: NF9711_low_19
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 378
Target Start/End: Original strand, 32376827 - 32377185
Alignment:
| Q |
20 |
ccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaattctaacagaagccaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376827 |
ccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaattctaacagaagccaat |
32376926 |
T |
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| Q |
120 |
acaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaagtctctccatgttccatccaaacacac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
32376927 |
acaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaatccaagtctctccatgttccatccaaacgcac |
32377026 |
T |
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| Q |
220 |
aaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataattcctccttg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32377027 |
aaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataattcctccttg |
32377126 |
T |
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| Q |
320 |
ttgatctttagatacaaatgcgtattttttctcaaagggtttgtctctaacttgaacct |
378 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32377127 |
ttgatctttagatacaaatgcgtattttttctcgaagggtttgtctctaacttgaacct |
32377185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 378
Target Start/End: Original strand, 32365142 - 32365500
Alignment:
| Q |
20 |
ccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaattctaacagaagccaat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32365142 |
ccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgtttgtctaacattgtcatcatcaattctaacagaagccaat |
32365241 |
T |
|
| Q |
120 |
acaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaagtctctccatgttccatccaaacacac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
32365242 |
acaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaatccaagtctctccatgttccatccaaacgcac |
32365341 |
T |
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| Q |
220 |
aaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataattcctccttg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32365342 |
aaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataatacctccttg |
32365441 |
T |
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| Q |
320 |
ttgatctttagatacaaatgcgtattttttctcaaagggtttgtctctaacttgaacct |
378 |
Q |
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||||||||||||| ||||||| ||||||||||| || ||||| |||||||||||||||| |
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| T |
32365442 |
ttgatctttagatgcaaatgcatattttttctcgaatggtttctctctaacttgaacct |
32365500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 84 - 304
Target Start/End: Original strand, 36121824 - 36122044
Alignment:
| Q |
84 |
ctaacattgtcatcatcaattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcc |
183 |
Q |
| |
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|||||| ||||||| ||||| |||||| |||||| | || ||||||||||| |||||||| || |||||||| || || || |||||||||||||| | |
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| T |
36121824 |
ctaacagtgtcatcctcaatattaacagcagccaagatgaaaatccaaaagggggccatacagaaaagcataaaagtggcaatgtgaacatacatgtttc |
36121923 |
T |
|
| Q |
184 |
caaaaccaagtctctccatgttccatccaaacacacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctcc |
283 |
Q |
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|||| |||||||||||||| ||||| ||||| ||||||||| ||||||||||| | ||||| | || | ||| | |||||||||||||||||| || |
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| T |
36121924 |
caaagccaagtctctccatattccaaccaaatgcacaaaaagtacagaaaagtgataaatatgcttgagagatatcgtcccaaatgtcaagtattccacc |
36122023 |
T |
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| Q |
284 |
actccatttcggtctattttc |
304 |
Q |
| |
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|||||| || ||||||||||| |
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| T |
36122024 |
actccactttggtctattttc |
36122044 |
T |
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